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Update README
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avivrosenberg committed Apr 9, 2024
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Expand Up @@ -44,18 +44,17 @@ It might work on Windows, however this was not tested and is not supported.
`mamba` in addition by running `conda install mamba -n base -c conda-forge`.
2. If on Apple slicon hardware (M1/M2 mac) run `export CONDA_SUBDIR=osx-64`.
before installing the environments.
2. Install the `arpeggio` environment by running
2. Optional: install the `arpeggio` environment by running
```shell
mamba env create -n arpeggio -f environment-arpeggio.yml
```
This is only required for tertiary contact analysis. Note that arpeggio is
installed into a separate environment because it requires packages which are
incompatible with the main pp5 environment.
3. Install the `pp5` environment by running
Note that arpeggio is installed into a separate environment because it
requires packages which are incompatible with the main `pp5` environment.
4. Install the `pp5` environment by running
```shell
mamba env create -n pp5 -f environment.yml
```
4. Test the arpeggio installation by running
5. Optional: test the arpeggio installation by running
```shell
mamba run -n arpeggio arpeggio --help
```
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