From 3f16d87140f2beb38572ffea857afafb9661d76c Mon Sep 17 00:00:00 2001 From: "Aviv A. Rosenberg" Date: Tue, 9 Apr 2024 13:55:31 +0300 Subject: [PATCH] Update README --- README.md | 11 +++++------ 1 file changed, 5 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 7d39d5f..5fdd932 100644 --- a/README.md +++ b/README.md @@ -44,18 +44,17 @@ It might work on Windows, however this was not tested and is not supported. `mamba` in addition by running `conda install mamba -n base -c conda-forge`. 2. If on Apple slicon hardware (M1/M2 mac) run `export CONDA_SUBDIR=osx-64`. before installing the environments. -2. Install the `arpeggio` environment by running +2. Optional: install the `arpeggio` environment by running ```shell mamba env create -n arpeggio -f environment-arpeggio.yml ``` - This is only required for tertiary contact analysis. Note that arpeggio is - installed into a separate environment because it requires packages which are - incompatible with the main pp5 environment. -3. Install the `pp5` environment by running + Note that arpeggio is installed into a separate environment because it + requires packages which are incompatible with the main `pp5` environment. +4. Install the `pp5` environment by running ```shell mamba env create -n pp5 -f environment.yml ``` -4. Test the arpeggio installation by running +5. Optional: test the arpeggio installation by running ```shell mamba run -n arpeggio arpeggio --help ```