Python protein translation #679
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| --- | |
| # | |
| # .github/workflows/c.yml | |
| # | |
| name: C Workflow | |
| on: # yamllint disable-line rule:truthy | |
| pull_request: | |
| defaults: | |
| run: | |
| shell: bash | |
| jobs: | |
| stage1: | |
| name: Change Check | |
| runs-on: 'ubuntu-latest' | |
| outputs: | |
| docs_changed: ${{ steps.check_file_changed.outputs.docs_changed }} | |
| steps: | |
| - name: Checkout Repo | |
| id: checkout-repo | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| ref: ${{ github.ref }} | |
| submodules: recursive | |
| - name: Get Change List | |
| id: check_file_changed | |
| run: | | |
| # Diff HEAD with the previous commit then output to stdout. | |
| printf "=== Which files changed? ===\n" | |
| GIT_DIFF="$(git diff --name-only HEAD^ HEAD)" | |
| printf "%s\n" "${GIT_DIFF}" | |
| printf "\n" | |
| # Check if the files are present in the changed file list (added, modified, deleted) then output to stdout. | |
| HAS_DIFF=false | |
| printf "=== Which C files changed? ===\n" | |
| if printf "%s\n" "${GIT_DIFF}" | grep -E '^(c/.*[.][ch]|c/.*/[Ma]akefile|.github/workflows/c.yml)$'; then | |
| HAS_DIFF=true | |
| fi | |
| printf "\n" | |
| # Did Golang files change? | |
| printf "=== Did C files change? ===\n" | |
| printf "%s\n" "${HAS_DIFF}" | |
| printf "\n" | |
| # Set the output named "docs_changed" | |
| printf "%s=%s\n" "docs_changed" "${HAS_DIFF}" >> "${GITHUB_OUTPUT}" | |
| stage2: | |
| name: C Checks | |
| strategy: | |
| matrix: | |
| os: ["ubuntu-latest", "windows-latest", "macos-latest"] | |
| exclude: | |
| - os: "macos-latest" | |
| - os: "windows-latest" | |
| runs-on: "${{ matrix.os }}" | |
| needs: [stage1] | |
| if: needs.stage1.outputs.docs_changed == 'True' | |
| steps: | |
| - name: Checkout Repo | |
| id: checkout-repo | |
| uses: actions/checkout@v3 | |
| - name: Install C Tools | |
| id: install-c-tools | |
| run: | | |
| sudo tee -a /etc/apt/sources.list <<EOF | |
| # deb http://apt.llvm.org/jammy/ llvm-toolchain-jammy main | |
| # deb-src http://apt.llvm.org/jammy/ llvm-toolchain-jammy main | |
| # deb http://apt.llvm.org/jammy/ llvm-toolchain-jammy-14 main | |
| # deb-src http://apt.llvm.org/jammy/ llvm-toolchain-jammy-14 main | |
| # deb http://apt.llvm.org/jammy/ llvm-toolchain-jammy-15 main | |
| # deb-src http://apt.llvm.org/jammy/ llvm-toolchain-jammy-15 main | |
| deb http://apt.llvm.org/jammy/ llvm-toolchain-jammy-16 main | |
| deb-src http://apt.llvm.org/jammy/ llvm-toolchain-jammy-16 main | |
| EOF | |
| wget -O - https://apt.llvm.org/llvm-snapshot.gpg.key | sudo apt-key add - | |
| sudo apt update | |
| # sudo apt install -y clang-16 lldb-16 lld-16 | |
| # sudo apt install -y libllvm-14-ocaml-dev libllvm14 llvm-14 llvm-14-dev llvm-14-doc llvm-14-examples llvm-14-runtime | |
| sudo apt install -y gcc clang-16 clang-tools-16 clang-tidy-16 | |
| # sudo apt install -y libssl-dev | |
| # sudo apt install -y lcov | |
| sudo apt install -y make | |
| - name: CD to C Dir | |
| id: cd-to-c-dir | |
| run: | | |
| pwd | |
| ls | |
| cd ./c | |
| pwd | |
| ls | |
| - name: Analysing the code with clang-check | |
| id: clang-check-16 | |
| run: | | |
| cd ./c | |
| ./for_each ../../.github/citools/c/clang-check | |
| - name: Analysing the code clang-tidy-16 | |
| id: clang-tidy-16 | |
| run: | | |
| cd ./c | |
| ./for_each ../../.github/citools/c/clang-tidy | |
| - name: Run Unit Tests | |
| id: make-test | |
| run: |- | |
| cd ./c | |
| ./for_each make test | |
| ./for_each make memcheck || true |