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Python protein translation #800

Python protein translation

Python protein translation #800

Workflow file for this run

---
#
# .github/workflows/haskell.yml
#
name: Haskell Workflow
on: # yamllint disable-line rule:truthy
pull_request:
defaults:
run:
shell: bash
jobs:
stage1:
name: Change Check
runs-on: 'ubuntu-latest'
outputs:
docs_changed: ${{ steps.check_file_changed.outputs.docs_changed }}
steps:
- name: Checkout Repo
id: checkout-repo
uses: actions/checkout@v3
with:
fetch-depth: 0
ref: ${{ github.ref }}
submodules: recursive
- name: Get Change List
id: check_file_changed
run: |
# Diff HEAD with the previous commit then output to stdout.
printf "=== Which files changed? ===\n"
GIT_DIFF="$(git diff --name-only HEAD^ HEAD)"
printf "%s\n" "${GIT_DIFF}"
printf "\n"
# Check if the files are present in the changed file list (added, modified, deleted) then output to stdout.
HAS_DIFF=false
printf "=== Which Haskell files changed? ===\n"
if printf "%s\n" "${GIT_DIFF}" | grep -E '^(haskell/.*[.](hs|cabal)|haskell/.*/stack[.]yaml[.].*|.github/workflows/haskell.yml)$'; then
HAS_DIFF=true
fi
printf "\n"
# Did Golang files change?
printf "=== Did Golang files change? ===\n"
printf "%s\n" "${HAS_DIFF}"
printf "\n"
# Set the output named "docs_changed"
printf "%s=%s\n" "docs_changed" "${HAS_DIFF}" >> "${GITHUB_OUTPUT}"
stage2:
name: Haskell Checks
strategy:
matrix:
os: ["ubuntu-latest", "windows-latest", "macos-latest"]
exclude:
- os: "macos-latest"
- os: "windows-latest"
runs-on: "${{ matrix.os }}"
needs: [stage1]
if: needs.stage1.outputs.docs_changed == 'True'
steps:
- name: Checkout Repo
id: checkout-repo
uses: actions/checkout@v3
# https://github.com/haskell/actions/tree/main/setup
- name: Set up Haskell Toolchain
id: setup-haskell-toolchain
uses: haskell/actions/setup@v2
with:
ghc-version: "latest"
enable-stack: true
stack-version: "latest"
stack-setup-ghc: true
cabal-version: "latest"
cabal-update: true
- name: Check Versions
id: setup-haskell-check
run: |
stack --version
cabal --version
- name: Install Tools
id: setup-haskell-tools
run: |
stack install hlint
hlint --version
- name: CD to Haskell Dir
id: cd-to-haskell-dir
run: |
pwd
ls
cd ./haskell
pwd
ls
- name: Analysing the code with hlint
id: haskell-lint
run: |
cd ./haskell
./for_each hlint src --report
- name: Testing with coverage
id: haskell-test-coverage
run: |-
cd ./haskell
./for_each stack test --coverage