python/protein-translation: 1st iteration - fix enum name case

vpayno · Apr 27, 2024 · 58e93f5 · 58e93f5
1 parent a7e305f
commit 58e93f5
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Showing 4 changed files with 143 additions and 150 deletions.
diff --git a/python/protein-translation/.coverage.xml b/python/protein-translation/.coverage.xml
@@ -1,5 +1,5 @@
 <?xml version="1.0" ?>
-<coverage branch-rate="0.7" branches-covered="7" branches-valid="10" complexity="0" line-rate="0.8947" lines-covered="34" lines-valid="38" timestamp="1714182958051" version="4.5.4">
+<coverage branch-rate="0.7" branches-covered="7" branches-valid="10" complexity="0" line-rate="0.8947" lines-covered="34" lines-valid="38" timestamp="1714183479610" version="4.5.4">
 	<!-- Generated by coverage.py: https://coverage.readthedocs.io -->
 	<!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
 	<sources>

diff --git a/python/protein-translation/protein_translation.py b/python/protein-translation/protein_translation.py
@@ -8,13 +8,13 @@
 
 
 class Proteins(Enum):
-    Methionine = enum_auto()
-    Phenylalanine = enum_auto()
-    Leucine = enum_auto()
-    Serine = enum_auto()
-    Tyrosine = enum_auto()
-    Cysteine = enum_auto()
-    Tryptophan = enum_auto()
+    METHIONINE = enum_auto()
+    PHENYLALANINE = enum_auto()
+    LEUCINE = enum_auto()
+    SERINE = enum_auto()
+    TYROSINE = enum_auto()
+    CYSTEINE = enum_auto()
+    TRYPTOPHAN = enum_auto()
     STOP = enum_auto()
 
 
@@ -26,20 +26,20 @@ class Proteins(Enum):
 CodonToProteinT = dict[CodonSequenceT, Proteins]
 
 CodonToProtein: CodonToProteinT = {
-    "AUG": Proteins.Methionine,
-    "UUU": Proteins.Phenylalanine,
-    "UUC": Proteins.Phenylalanine,
-    "UUA": Proteins.Leucine,
-    "UUG": Proteins.Leucine,
-    "UCU": Proteins.Serine,
-    "UCC": Proteins.Serine,
-    "UCA": Proteins.Serine,
-    "UCG": Proteins.Serine,
-    "UAU": Proteins.Tyrosine,
-    "UAC": Proteins.Tyrosine,
-    "UGU": Proteins.Cysteine,
-    "UGC": Proteins.Cysteine,
-    "UGG": Proteins.Tryptophan,
+    "AUG": Proteins.METHIONINE,
+    "UUU": Proteins.PHENYLALANINE,
+    "UUC": Proteins.PHENYLALANINE,
+    "UUA": Proteins.LEUCINE,
+    "UUG": Proteins.LEUCINE,
+    "UCU": Proteins.SERINE,
+    "UCC": Proteins.SERINE,
+    "UCA": Proteins.SERINE,
+    "UCG": Proteins.SERINE,
+    "UAU": Proteins.TYROSINE,
+    "UAC": Proteins.TYROSINE,
+    "UGU": Proteins.CYSTEINE,
+    "UGC": Proteins.CYSTEINE,
+    "UGG": Proteins.TRYPTOPHAN,
     "UAA": Proteins.STOP,
     "UAG": Proteins.STOP,
     "UGA": Proteins.STOP,
@@ -81,6 +81,6 @@ def proteins(rna_sequence: RnaSequenceT) -> ProteinListT:
         if protein == Proteins.STOP:
             break
 
-        result.append(protein.name)
+        result.append(protein.name.title())
 
     return result
diff --git a/python/protein-translation/protein_translation.py,cover b/python/protein-translation/protein_translation.py,cover
@@ -8,13 +8,13 @@
 
 
 > class Proteins(Enum):
->     Methionine = enum_auto()
->     Phenylalanine = enum_auto()
->     Leucine = enum_auto()
->     Serine = enum_auto()
->     Tyrosine = enum_auto()
->     Cysteine = enum_auto()
->     Tryptophan = enum_auto()
+>     METHIONINE = enum_auto()
+>     PHENYLALANINE = enum_auto()
+>     LEUCINE = enum_auto()
+>     SERINE = enum_auto()
+>     TYROSINE = enum_auto()
+>     CYSTEINE = enum_auto()
+>     TRYPTOPHAN = enum_auto()
 >     STOP = enum_auto()
 
 
@@ -26,20 +26,20 @@
 > CodonToProteinT = dict[CodonSequenceT, Proteins]
 
 > CodonToProtein: CodonToProteinT = {
->     "AUG": Proteins.Methionine,
->     "UUU": Proteins.Phenylalanine,
->     "UUC": Proteins.Phenylalanine,
->     "UUA": Proteins.Leucine,
->     "UUG": Proteins.Leucine,
->     "UCU": Proteins.Serine,
->     "UCC": Proteins.Serine,
->     "UCA": Proteins.Serine,
->     "UCG": Proteins.Serine,
->     "UAU": Proteins.Tyrosine,
->     "UAC": Proteins.Tyrosine,
->     "UGU": Proteins.Cysteine,
->     "UGC": Proteins.Cysteine,
->     "UGG": Proteins.Tryptophan,
+>     "AUG": Proteins.METHIONINE,
+>     "UUU": Proteins.PHENYLALANINE,
+>     "UUC": Proteins.PHENYLALANINE,
+>     "UUA": Proteins.LEUCINE,
+>     "UUG": Proteins.LEUCINE,
+>     "UCU": Proteins.SERINE,
+>     "UCC": Proteins.SERINE,
+>     "UCA": Proteins.SERINE,
+>     "UCG": Proteins.SERINE,
+>     "UAU": Proteins.TYROSINE,
+>     "UAC": Proteins.TYROSINE,
+>     "UGU": Proteins.CYSTEINE,
+>     "UGC": Proteins.CYSTEINE,
+>     "UGG": Proteins.TRYPTOPHAN,
 >     "UAA": Proteins.STOP,
 >     "UAG": Proteins.STOP,
 >     "UGA": Proteins.STOP,
@@ -81,6 +81,6 @@
 >         if protein == Proteins.STOP:
 >             break
 
->         result.append(protein.name)
+>         result.append(protein.name.title())
 
 >     return result