Snakefile pipeline of all the steps taken to reconstruct the CIA transcriptome assembly as in (Alfonso-Gonzalez, 2022).
The documentation for this project is hosted at ReadTheDocs.
Occasionally there can be an issue installing R packages in the cia-sqanti
environment. This will manifest in an error like this:
Error in if (nzchar(SHLIB_LIBADD)) SHLIB_LIBADD else character() :
argument is of length zero
if you run into this error, follow the instructions from this thread.