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environment.yml
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environment.yml
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name: cphasing
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.12=h4ab18f5_0
- anyio=4.4.0=pyhd8ed1ab_0
- arpack=3.9.1=nompi_h77f6705_101
- asciitree=0.3.3=py_2
- attr=2.5.1=h166bdaf_1
- aws-c-auth=0.7.22=h96bc93b_2
- aws-c-cal=0.6.14=h88a6e22_1
- aws-c-common=0.9.19=h4ab18f5_0
- aws-c-compression=0.2.18=h83b837d_6
- aws-c-event-stream=0.4.2=ha47c788_12
- aws-c-http=0.8.1=h29d6fba_17
- aws-c-io=0.14.8=h21d4f22_5
- aws-c-mqtt=0.10.4=h759edc4_4
- aws-c-s3=0.5.9=h594631b_3
- aws-c-sdkutils=0.1.16=h83b837d_2
- aws-checksums=0.1.18=h83b837d_6
- aws-crt-cpp=0.26.9=he3a8b3b_0
- aws-sdk-cpp=1.11.329=hba8bd5f_3
- bedtools=2.31.1=hf5e1c6e_2
- biopython=1.84=py312h9a8786e_0
- blinker=1.8.2=pyhd8ed1ab_0
- blosc=1.21.3=h6a678d5_0
- bokeh=3.5.1=pyhd8ed1ab_0
- brotli=1.1.0=hd590300_1
- brotli-bin=1.1.0=hd590300_1
- brotli-python=1.1.0=py312h30efb56_1
- bzip2=1.0.8=h5eee18b_6
- c-ares=1.32.3=h4bc722e_0
- c-blosc2=2.15.1=hc57e6cf_0
- ca-certificates=2024.8.30=hbcca054_0
- cached-property=1.5.2=hd8ed1ab_1
- cached_property=1.5.2=pyha770c72_1
- cairo=1.18.0=h3faef2a_0
- certifi=2024.8.30=pyhd8ed1ab_0
- cffi=1.16.0=py312hf06ca03_0
- chardet=5.2.0=py312h7900ff3_1
- charset-normalizer=3.3.2=pyhd8ed1ab_0
- click=8.1.7=unix_pyh707e725_0
- click-didyoumean=0.3.1=pyhd8ed1ab_0
- cloudpickle=3.0.0=pyhd8ed1ab_0
- colormaps=0.4.2=pyhd8ed1ab_0
- contourpy=1.2.1=py312h8572e83_0
- cooler=0.10.2=pyhdfd78af_0
- cycler=0.12.1=pyhd8ed1ab_0
- cytoolz=0.12.3=py312h98912ed_0
- dask=2024.7.1=pyhd8ed1ab_0
- dask-core=2024.7.1=pyhd8ed1ab_0
- dask-expr=1.1.9=pyhd8ed1ab_0
- dbus=1.13.6=h5008d03_3
- dep-logic=0.4.4=pyhd8ed1ab_0
- dill=0.3.8=pyhd8ed1ab_0
- distlib=0.3.8=pyhd8ed1ab_0
- distributed=2024.7.1=pyhd8ed1ab_0
- exceptiongroup=1.2.2=pyhd8ed1ab_0
- expat=2.6.2=h6a678d5_0
- filelock=3.15.4=pyhd8ed1ab_0
- findpython=0.6.1=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_2
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.53.1=py312h41a817b_0
- freetype=2.12.1=h267a509_2
- fsspec=2024.6.1=pyhff2d567_0
- gettext=0.22.5=h59595ed_2
- gettext-tools=0.22.5=h59595ed_2
- gflags=2.2.2=he1b5a44_1004
- glib=2.80.2=hf974151_0
- glib-tools=2.80.2=hb6ce0ca_0
- glog=0.7.1=hbabe93e_0
- glpk=5.0=h445213a_0
- gmp=6.3.0=hac33072_2
- graphite2=1.3.13=h59595ed_1003
- gsl=2.7=he838d99_0
- gst-plugins-base=1.24.4=h9ad1361_0
- gstreamer=1.24.4=haf2f30d_0
- h11=0.14.0=pyhd8ed1ab_0
- h2=4.1.0=pyhd8ed1ab_0
- h5py=3.11.0=py312h34c39bb_0
- harfbuzz=8.5.0=hfac3d4d_0
- hdf5=1.12.1=nompi_h4df4325_104
- hicmatrix=17.2=pyhdfd78af_0
- hishel=0.0.30=pyhd8ed1ab_0
- hpack=4.0.0=pyh9f0ad1d_0
- htslib=1.20=h5efdd21_2
- httpcore=1.0.5=pyhd8ed1ab_0
- httpx=0.27.0=pyhd8ed1ab_0
- hyperframe=6.0.1=pyhd8ed1ab_0
- icu=73.2=h59595ed_0
- idna=3.7=pyhd8ed1ab_0
- importlib-metadata=8.2.0=pyha770c72_0
- importlib-resources=6.4.0=pyhd8ed1ab_0
- importlib_metadata=8.2.0=hd8ed1ab_0
- importlib_resources=6.4.0=pyhd8ed1ab_0
- intervaltree=3.1.0=pyhd8ed1ab_1
- jinja2=3.1.4=pyhd8ed1ab_0
- joblib=1.4.2=pyhd8ed1ab_0
- k8=0.2.5=hdcf5f25_4
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.5=py312h8572e83_1
- krb5=1.21.3=h659f571_0
- lame=3.100=h166bdaf_1003
- lcms2=2.16=hb7c19ff_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=4.0.0=h27087fc_0
- libabseil=20240116.2=cxx17_he02047a_1
- libaec=1.1.3=h59595ed_0
- libarrow=13.0.0=h34ad07a_42_cpu
- libasprintf=0.22.5=h661eb56_2
- libasprintf-devel=0.22.5=h661eb56_2
- libblas=3.9.0=23_linux64_openblas
- libbrotlicommon=1.1.0=hd590300_1
- libbrotlidec=1.1.0=hd590300_1
- libbrotlienc=1.1.0=hd590300_1
- libcap=2.69=h0f662aa_0
- libcblas=3.9.0=23_linux64_openblas
- libclang-cpp15=15.0.7=default_h127d8a8_5
- libclang13=18.1.7=default_h087397f_0
- libcrc32c=1.1.2=h9c3ff4c_0
- libcups=2.3.3=h4637d8d_4
- libcurl=8.8.0=hca28451_1
- libdeflate=1.20=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libevent=2.1.12=hf998b51_1
- libexpat=2.6.2=h59595ed_0
- libffi=3.4.4=h6a678d5_1
- libflac=1.4.3=h59595ed_0
- libgcc-ng=14.1.0=h77fa898_0
- libgcrypt=1.11.0=h4ab18f5_1
- libgettextpo=0.22.5=h59595ed_2
- libgettextpo-devel=0.22.5=h59595ed_2
- libgfortran-ng=14.1.0=h69a702a_0
- libgfortran5=14.1.0=hc5f4f2c_0
- libglib=2.80.2=hf974151_0
- libgomp=14.1.0=h77fa898_0
- libgoogle-cloud=2.24.0=h2736e30_0
- libgoogle-cloud-storage=2.24.0=h3d9a0c8_0
- libgpg-error=1.50=h4f305b6_0
- libgrpc=1.62.2=h15f2491_0
- libiconv=1.17=hd590300_2
- libjemalloc=5.3.0=hcb278e6_0
- libjpeg-turbo=3.0.0=hd590300_1
- liblapack=3.9.0=23_linux64_openblas
- libllvm15=15.0.7=hb3ce162_4
- libllvm18=18.1.7=hb77312f_0
- libnghttp2=1.58.0=h47da74e_1
- libnl=3.10.0=h4bc722e_0
- libnsl=2.0.1=hd590300_0
- libogg=1.3.5=h4ab18f5_0
- libopenblas=0.3.27=pthreads_hac2b453_1
- libopus=1.3.1=h7f98852_1
- libpng=1.6.43=h2797004_0
- libpq=16.3=ha72fbe1_0
- libprotobuf=4.25.3=h08a7969_0
- libre2-11=2023.09.01=h5a48ba9_2
- libsndfile=1.2.2=hc60ed4a_1
- libsqlite=3.46.0=hde9e2c9_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=14.1.0=hc0a3c3a_0
- libsystemd0=255=h3516f8a_1
- libthrift=0.19.0=hb90f79a_1
- libtiff=4.6.0=h1dd3fc0_3
- libutf8proc=2.8.0=h166bdaf_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxcrypt=4.4.36=hd590300_1
- libxkbcommon=1.7.0=h662e7e4_0
- libxml2=2.12.7=hc051c1a_1
- libzlib=1.2.13=h4ab18f5_6
- locket=1.0.0=pyhd8ed1ab_0
- lz4=4.3.3=py312h03f37cb_0
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=hd590300_1001
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.5=py312h98912ed_0
- matplotlib=3.8.0=py312h7900ff3_2
- matplotlib-base=3.8.0=py312he5832f3_2
- mdurl=0.1.2=pyhd8ed1ab_0
- minigraph=0.21=he4a0461_1
- minimap2=2.24=h7132678_1
- mpg123=1.32.6=h59595ed_0
- mpi=1.0=openmpi
- msgpack-python=1.0.8=py312h2492b07_0
- msgspec=0.18.6=py312h98912ed_0
- multiprocess=0.70.16=py312h98912ed_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.3.0=hf1915f5_4
- mysql-libs=8.3.0=hca2cd23_4
- natsort=8.4.0=pyhd8ed1ab_0
- ncls=0.0.68=py312hf67a6ed_4
- ncurses=6.4=h6a678d5_0
- networkx=3.3=pyhd8ed1ab_1
- nomkl=1.0=h5ca1d4c_0
- nspr=4.35=h27087fc_0
- nss=3.100=hca3bf56_0
- numexpr=2.10.0=py312hf412c99_100
- numpy=1.26.4=py312heda63a1_0
- openjpeg=2.5.2=h488ebb8_0
- openmpi=4.1.6=hc5af2df_101
- openssl=3.3.1=h4bc722e_2
- orc=2.0.1=h17fec99_1
- packaging=24.1=pyhd8ed1ab_0
- pairix=0.3.8=py312he57d009_3
- pandarallel=1.6.5=pyhd8ed1ab_0
- pandas=2.2.2=py312h1d6d2e6_1
- partd=1.4.2=pyhd8ed1ab_0
- patchworklib=0.6.3=pyhd8ed1ab_0
- patsy=0.5.6=pyhd8ed1ab_0
- pbs-installer=2024.4.24=pyhd8ed1ab_0
- pcre2=10.43=hcad00b1_0
- pdm=2.17.1=pyhd8ed1ab_0
- perl=5.32.1=7_hd590300_perl5
- pillow=10.3.0=py312hdcec9eb_0
- pip=24.0=py312h06a4308_0
- pixman=0.43.2=h59595ed_0
- platformdirs=4.2.2=pyhd8ed1ab_0
- ply=3.11=pyhd8ed1ab_2
- polars=0.20.31=py312hd26010a_1
- portion=2.4.2=pyhd8ed1ab_0
- psutil=6.0.0=py312h9a8786e_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulseaudio-client=17.0=hb77b528_0
- py-cpuinfo=9.0.0=pyhd8ed1ab_0
- pyarrow=13.0.0=py312h3f82784_42_cpu
- pyarrow-hotfix=0.6=pyhd8ed1ab_0
- pycparser=2.22=pyhd8ed1ab_0
- pyfaidx=0.8.1.1=pyhdfd78af_0
- pygments=2.18.0=pyhd8ed1ab_0
- pyparsing=3.1.2=pyhd8ed1ab_0
- pyproject_hooks=1.1.0=pyhd8ed1ab_0
- pyqt=5.15.9=py312h949fe66_5
- pyqt5-sip=12.12.2=py312h30efb56_5
- pyranges=0.1.2=pyhdfd78af_1
- pysam=0.22.1=py312hcfdcdd7_2
- pysocks=1.7.1=pyha2e5f31_6
- pytables=3.9.2=py312h387d6ec_0
- python=3.12.2=hab00c5b_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-dotenv=1.0.1=pyhd8ed1ab_0
- python-igraph=0.11.5=py312h4f72774_1
- python-installer=0.7.0=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.12=4_cp312
- pytools=2024.1.11=pyhd8ed1ab_0
- pytz=2024.1=pyhd8ed1ab_0
- pyvcf3=1.0.3=pyhdfd78af_0
- pyyaml=6.0.1=py312h98912ed_1
- qhull=2020.2=h434a139_5
- qt-main=5.15.8=hc9dc06e_21
- ray=2.3.1=hdf94a1f_6
- rdma-core=52.0=he02047a_0
- re2=2023.09.01=h7f4b329_2
- readline=8.2=h5eee18b_0
- requests=2.32.3=pyhd8ed1ab_0
- resolvelib=1.0.1=pyhd8ed1ab_0
- rich=13.7.1=pyhd8ed1ab_0
- rich-click=1.7.4=pyhd8ed1ab_0
- s2n=1.4.15=he19d79f_0
- samtools=1.19.2=h50ea8bc_1
- scikit-learn=1.5.1=py312h775a589_0
- scipy=1.14.0=py312hc2bc53b_1
- seaborn=0.13.2=hd8ed1ab_2
- seaborn-base=0.13.2=pyhd8ed1ab_2
- seqkit=2.8.2=h9ee0642_1
- setuptools=69.5.1=py312h06a4308_0
- shellingham=1.5.4=pyhd8ed1ab_0
- simplejson=3.19.2=py312h98912ed_0
- sip=6.7.12=py312h30efb56_0
- siphash24=1.6=py312h41a817b_1
- six=1.16.0=pyh6c4a22f_0
- snappy=1.2.1=ha2e4443_0
- sniffio=1.3.1=pyhd8ed1ab_0
- socksio=1.0.0=pyhd8ed1ab_0
- sorted_nearest=0.0.39=py312hf67a6ed_2
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- sqlite=3.45.3=h5eee18b_0
- statsmodels=0.14.2=py312h085067d_0
- tabulate=0.9.0=pyhd8ed1ab_1
- tblib=3.0.0=pyhd8ed1ab_0
- texttable=1.7.0=pyhd8ed1ab_0
- threadpoolctl=3.5.0=pyhc1e730c_0
- tk=8.6.14=h39e8969_0
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tomlkit=0.13.0=pyha770c72_0
- toolz=0.12.1=pyhd8ed1ab_0
- tornado=6.4.1=py312h9a8786e_0
- typing-extensions=4.12.2=hd8ed1ab_0
- typing_extensions=4.12.2=pyha770c72_0
- tzdata=2024a=h04d1e81_0
- ucx=1.16.0=h209287a_5
- unearth=0.16.1=pyhd8ed1ab_0
- urllib3=2.2.2=pyhd8ed1ab_0
- virtualenv=20.26.3=pyhd8ed1ab_0
- wfmash=0.17.0=h11f254b_0
- wheel=0.43.0=py312h06a4308_0
- xcb-util=0.4.0=hd590300_1
- xcb-util-image=0.4.0=h8ee46fc_1
- xcb-util-keysyms=0.4.0=h8ee46fc_1
- xcb-util-renderutil=0.3.9=hd590300_1
- xcb-util-wm=0.4.1=h8ee46fc_1
- xkeyboard-config=2.42=h4ab18f5_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.9=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xf86vidmodeproto=2.3.1=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xyzservices=2024.6.0=pyhd8ed1ab_0
- xz=5.4.6=h5eee18b_1
- yaml=0.2.5=h7f98852_2
- zict=3.0.0=pyhd8ed1ab_0
- zipp=3.19.2=pyhd8ed1ab_0
- zlib=1.2.13=h4ab18f5_6
- zlib-ng=2.2.1=he02047a_0
- zstandard=0.23.0=py312h3483029_0
- zstd=1.5.6=ha6fb4c9_0