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disease_network.html
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---
title: Disease Network
layout: default
permalink: /disease-network/
mathjax: false
---
<!DOCTYPE>
<html>
<head>
<title>Demo for disease network</title>
<script src="http://code.jquery.com/jquery-1.11.0.min.js"></script>
<meta name="viewport" content="width=device-width, user-scalable=no, initial-scale=1, maximum-scale=1">
<script src="https://unpkg.com/cytoscape/dist/cytoscape.min.js"></script>
<meta http-equiv="Content-type" content="text/html; charset=utf-8">
<!-- <script src="{{ "/assets/js/disease_selection_part1.js" | relative_url }}"></script> -->
<!-- <script src="{{ "/assets/js/disease_selection_part2.js" | relative_url }}"></script> -->
<script src="/assets/js/disease_selection_part1.js"></script>
<script src="/assets/js/disease_selection_part2.js"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/Chart.js/2.4.0/Chart.min.js"></script>
<script src="https://unpkg.com/popper.js"></script>
<script src="cytoscape-popper.js"></script>
<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/4.0.0/css/bootstrap.min.css">
<link rel="stylesheet" href="https://unpkg.com/tippy.js@2.0.9/dist/tippy.css" />
<style>
body {
font-family: helvetica neue, helvetica, liberation sans, arial, sans-serif;
font-size: 14px;
/* height:1800px; */
}
#cy {
height: 100%;
left: 0;
top: 0;
bottom: 0;
right: 0;
}
h1 {
opacity: 1;
font-size: 1.5em;
font-weight: bold;
}
h8{
opacity: 1;
font-size: 3em;
font-weight: bold;
}
h6 {
opacity: 0.5;
font-size: 1em;
font-weight: bold;
}
h3{
font-size: 2em;
font-weight: bold;
}
h2 {
font-size: 1em;
font-weight: bold;
}
#bt1{
left: 0;
top: 0;
bottom: 0;
right: 0;
width:100%;
height: 10%;
}
#bt2{
left: 0;
top: 0;
bottom: 0;
right: 0;
width:100%;
height: 10%;
}
#bt3{
left: 0;
top: 0;
bottom: 0;
right: 0;
width:100%;
height: 10%;
}
#bt5{
left: 0;
top: 0;
bottom: 0;
right: 0;
width:100%;
height: 10%;
}
#input{
left: 0;
top: 0;
bottom: 0;
right: 0;
width:100%;
height: 100%;
}
#pred{
top: 0;
width:100%;
}
</style>
<script>
var newdata = [
{data:{id:'0',name:'Angiosarcoma'}},
{data:{id:'1',name:'Tinea barbae'}},
{data:{id:'2',name:'Sinusitis'}},
{data:{id:'3',name:'Otomycosis'}},
{data:{id:'4',name:'Tungiasis'}},
{data:{id:'5',name:'Aniseikonia'}},
{data:{id:'6',name:'Ladd syndrome'}},
{data:{id:'7',name:'Lissencephaly'}},
{data:{id:'8',name:'Monilethrix'}},
{data:{id:'9',name:'Exanthem'}},
{data:{id:'10',name:'Spinal polio'}},
{data:{id:'11',name:'Jmp syndrome'}},
{data:{id:'12',name:'West syndrome'}},
{data:{id:'13',name:'Abcd syndrome'}},
{data:{id:'14',name:'Acheiropody'}},
{data:{id:'15',name:'Askins tumor'}},
{data:{id:'16',name:'Respiratory system cancer'}},
{data:{id:'17',name:'Paranasal sinus cancer'}},
{data:{id:'18',name:'Obsolete soft tissue cancer'}},
{data:{id:'19',name:'Female breast cancer'}},
{data:{id:'20',name:'Organ system cancer'}},
{data:{id:'21',name:'Cell type cancer'}},
{data:{id:'22',name:'Anal canal cancer'}},
{data:{id:'23',name:'Arc syndrome'}},
{data:{id:'24',name:'Aphasia'}},
{data:{id:'25',name:'Nosophobia'}},
{data:{id:'26',name:'Lymphatic system cancer'}},
{data:{id:'27',name:'Osteoblastoma'}},
{data:{id:'28',name:'Benign glioma'}},
{data:{id:'29',name:'Brain glioma'}},
{data:{id:'30',name:'Sensory system cancer'}},
{data:{id:'31',name:'Pharynx cancer'}},
{data:{id:'32',name:'Integumentary system cancer'}},
{data:{id:'33',name:'Akinetopsia'}},
{data:{id:'34',name:'Amusia'}},
{data:{id:'35',name:'Anosognosia'}},
{data:{id:'36',name:'Color agnosia'}},
{data:{id:'37',name:'Form agnosia'}},
{data:{id:'38',name:'Phonagnosia'}},
{data:{id:'39',name:'Astereognosia'}},
{data:{id:'40',name:'Time agnosia'}},
{data:{id:'41',name:'Bone disease'}},
{data:{id:'42',name:'Endometritis'}},
{data:{id:'43',name:'Ampulla of vater cancer'}},
{data:{id:'44',name:'Duodenum cancer'}},
{data:{id:'45',name:'Cycloplegia'}},
{data:{id:'46',name:'Sparganosis'}},
{data:{id:'47',name:'Keratoconus'}},
{data:{id:'48',name:'Asthenopia'}},
{data:{id:'49',name:'Long bones of lower limb cancer'}},
{data:{id:'50',name:'Obsolete lower limb cancer'}},
{data:{id:'51',name:'Meckels diverticulum cancer'}},
{data:{id:'52',name:'Ileum cancer'}},
{data:{id:'53',name:'Small intestine cancer'}},
{data:{id:'54',name:'Intestinal cancer'}},
{data:{id:'55',name:'Osteonecrosis'}},
{data:{id:'56',name:'Skin lipoma'}},
{data:{id:'57',name:'Osteomyelitis'}},
{data:{id:'58',name:'Liver lipoma'}},
{data:{id:'59',name:'Kidney lipoma'}},
{data:{id:'60',name:'Leprosy'}},
{data:{id:'61',name:'Ehrlichiosis'}},
{data:{id:'62',name:'Mumps'}},
{data:{id:'63',name:'Prostate cancer'}},
{data:{id:'64',name:'Parotitis'}},
{data:{id:'65',name:'Sialadenitis'}},
{data:{id:'66',name:'Asbestosis'}},
{data:{id:'67',name:'Baritosis'}},
{data:{id:'68',name:'Berylliosis'}},
{data:{id:'69',name:'Anthracosis'}},
{data:{id:'70',name:'Epididymis cancer'}},
{data:{id:'71',name:'Yaws'}},
{data:{id:'72',name:'Amblyopia'}},
{data:{id:'73',name:'Hypopyon'}},
{data:{id:'74',name:'Meningitis'}},
{data:{id:'75',name:'Hepatitis a'}},
{data:{id:'76',name:'Hepatitis b'}},
{data:{id:'77',name:'Hepatitis c'}},
{data:{id:'78',name:'Malaria'}},
{data:{id:'79',name:'Whooping cough'}},
{data:{id:'80',name:'Parkinsons disease'}},
{data:{id:'81',name:'Thrombosis'}},
{data:{id:'82',name:'Conjunctivitis'}},
{data:{id:'83',name:'Glaucoma'}},
{data:{id:'84',name:'Schizophrenia'}},
{data:{id:'85',name:'Depression'}},
{data:{id:'86',name:'Leukemia'}},
{data:{id:'87',name:'Lung cancer'}},
{data:{id:'88',name:'Pancreatitis'}},
{data:{id:'89',name:'Endometriosis'}},
{data:{id:'90',name:'Nephritis'}},
{data:{id:'91',name:'Bronchitis'}},
{data:{id:'92',name:'Tuberculosis'}},
{data:{id:'93',name:'Common cold'}},
];
var text = '{ "sites" : [' +
'{"name":"Angiosarcoma <br> ","pheno":"1. Bilobate gallbladder <br> 2. Hypoplasia of the gallbladder <br> 3. Atretic gallbladder <br> 4. Absent gallbladder <br> 5. Neoplasm of the gallbladder <br> 6. Metastatic angiosarcoma <br> 7. Infra-aortic superior vena cava <br> 8. Gallbladder dysfunction <br> 9. Aplasia/hypoplasia of the gallbladder <br> ","phenovalue":"0.74 <br> 0.74 <br> 0.72 <br> 0.72 <br> 0.71 <br> 0.71 <br> 0.70 <br> 0.69 <br> 0.65 <br> ","phenoindex":"1 <br> 2 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Tinea barbae <br> ","pheno":"1. Angiokeratoma corporis diffusum <br> 2. Abnormality of the os naviculare pedis <br> 3. Onychogryposis of toenails <br> 4. Vascular skin abnormality <br> 5. Generalized seborrheic dermatitis <br> 6. Absent toenail <br> 7. Abnormality of the tarsal bones <br> 8. Recurrent cutaneous fungal infections <br> 9. Recurrent loss of toenails and fingernails <br> ","phenovalue":"0.72 <br> 0.58 <br> 0.38 <br> 0.36 <br> 0.35 <br> 0.35 <br> 0.34 <br> 0.34 <br> 0.34 <br> ","phenoindex":"1 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Sinusitis <br> ","pheno":"1. Chronic sinusitis <br> 2. Acute sinusitis <br> 3. Abnormality of the paranasal sinuses <br> 4. Recurrent sinusitis <br> 5. Abnormality of facial skeleton <br> 6. Absent frontal sinuses <br> 7. Hypoplastic frontal sinuses <br> ","phenovalue":"0.82 <br> 0.79 <br> 0.77 <br> 0.74 <br> 0.59 <br> 0.58 <br> 0.57 <br> ","phenoindex":"2 <br> 3 <br> 4 <br> 5 <br> 7 <br> 8 <br> 9 <br> "},'+
'{"name":"Otomycosis <br> ","pheno":"1. Stahl ear <br> 2. Crumpled ear <br> 3. Telangiectasia of the ear <br> 4. Microtia, second degree <br> 5. Additional crus of antihelix <br> 6. Pointed helix <br> 7. Anotia <br> 8. Neoplasm of the middle ear <br> ","phenovalue":"0.74 <br> 0.74 <br> 0.73 <br> 0.69 <br> 0.67 <br> 0.67 <br> 0.64 <br> 0.61 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 6 <br> 7 <br> 8 <br> 10 <br> "},'+
'{"name":"Tungiasis <br> ","pheno":"1. Obsolete acral ulceration and osteomyelitis leading to autoamputation of the digits (feet) <br> 2. Foot oligodactyly <br> 3. Autoamputation of foot <br> 4. Hypertrophy of skin of soles <br> 5. Difficulty walking <br> 6. Bulbous tips of toes <br> 7. Subungual hyperkeratotic fragments <br> 8. Subungual fibromas <br> 9. Subungual hyperkeratosis <br> 10. Onychogryposis of toenails <br> ","phenovalue":"0.36 <br> 0.34 <br> 0.33 <br> 0.33 <br> 0.33 <br> 0.33 <br> 0.33 <br> 0.33 <br> 0.33 <br> 0.31 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Aniseikonia <br> ","pheno":"1. Abnormal stereopsis <br> 2. Abnormality of binocular vision <br> 3. Monocular strabismus <br> 4. Poor eye contact <br> 5. Hypermetropia <br> 6. Unilateral oligodactyly <br> 7. Unilateral microphthalmos <br> ","phenovalue":"0.51 <br> 0.50 <br> 0.36 <br> 0.36 <br> 0.33 <br> 0.31 <br> 0.31 <br> ","phenoindex":"1 <br> 2 <br> 4 <br> 5 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Ladd syndrome <br> ","pheno":"1. Adrenogenital syndrome <br> 2. Puberty and gonadal disorders <br> 3. Congenital horner syndrome <br> 4. Horner syndrome <br> 5. Miosis <br> 6. Abnormality of the endocrine system <br> 7. Contiguous gene syndrome <br> 8. Reye syndrome-like episodes <br> ","phenovalue":"0.94 <br> 0.59 <br> 0.51 <br> 0.49 <br> 0.44 <br> 0.38 <br> 0.37 <br> 0.36 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Lissencephaly <br> ","pheno":"1. Type ii lissencephaly <br> 2. Focal lissencephaly <br> 3. 4-layered lissencephaly <br> 4. Abnormal cortical gyration <br> 5. Abnormality of neuronal migration <br> 6. Abnormality of the cerebral cortex <br> 7. Pachygyria <br> 8. Schizencephaly <br> 9. Unilateral polymicrogyria <br> ","phenovalue":"0.99 <br> 0.94 <br> 0.83 <br> 0.76 <br> 0.71 <br> 0.68 <br> 0.60 <br> 0.60 <br> 0.55 <br> ","phenoindex":"1 <br> 2 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Monilethrix <br> ","pheno":"1. Large clumps of pigment irregularly distributed along hair shaft <br> 2. Melanin pigment aggregation in hair shafts <br> 3. Pili canaliculi <br> 4. Pili torti <br> 5. Fair hair <br> 6. Cuticle of hair <br> 7. Abnormal hair laboratory examination <br> 8. Abnormal number of hair whorls <br> 9. Woolly hair <br> 10. Trichorrhexis nodosa <br> ","phenovalue":"0.62 <br> 0.58 <br> 0.56 <br> 0.51 <br> 0.50 <br> 0.49 <br> 0.49 <br> 0.48 <br> 0.47 <br> 0.47 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Exanthem <br> ","pheno":"1. Perianal rash <br> 2. Hyperkeratosis with erythema <br> 3. Intermittent generalized erythematous papular rash <br> 4. Palmoplantar keratosis with erythema and scale <br> 5. Abnormality of the anus <br> 6. Facial erythema <br> 7. Skin rash <br> 8. Subacute progressive viral hepatitis <br> ","phenovalue":"0.60 <br> 0.57 <br> 0.42 <br> 0.41 <br> 0.40 <br> 0.39 <br> 0.39 <br> 0.36 <br> ","phenoindex":"1 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> "},'+
'{"name":"Spinal polio <br> ","pheno":"1. Spinal hemangioblastoma <br> 2. Acute infantile spinal muscular atrophy <br> 3. Spinal dysplasia <br> 4. Late-onset distal muscle weakness <br> 5. Progressive distal muscular atrophy <br> 6. Progressive spinal muscular atrophy <br> 7. Scapuloperoneal weakness <br> ","phenovalue":"0.33 <br> 0.33 <br> 0.33 <br> 0.32 <br> 0.32 <br> 0.31 <br> 0.30 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 5 <br> 6 <br> 7 <br> 8 <br> "},'+
'{"name":"Jmp syndrome <br> ","pheno":"1. Multiple joint contractures <br> 2. Sclerotic vertebral endplates <br> 3. Progressive flexion contractures <br> 4. Nonprogressive muscular atrophy <br> 5. Congenital finger flexion contractures <br> 6. Congenital foot contractures <br> 7. Metacarpophalangeal joint contracture <br> 8. Progressive spinal muscular atrophy <br> 9. Progressive distal muscular atrophy <br> ","phenovalue":"0.68 <br> 0.61 <br> 0.61 <br> 0.61 <br> 0.61 <br> 0.60 <br> 0.59 <br> 0.57 <br> 0.56 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> "},'+
'{"name":"West syndrome <br> ","pheno":"1. Epileptic spasms <br> 2. Hypsarrhythmia <br> 3. Myoclonic spasms <br> 4. Infantile encephalopathy <br> 5. Myoclonic atonic seizures <br> 6. Eeg with generalized epileptiform discharges <br> 7. Progressive encephalopathy <br> 8. Symptomatic seizures <br> 9. Hemihypsarrhythmia <br> ","phenovalue":"0.66 <br> 0.54 <br> 0.49 <br> 0.44 <br> 0.42 <br> 0.41 <br> 0.41 <br> 0.40 <br> 0.40 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Abcd syndrome <br> ","pheno":"1. Partial albinism <br> 2. Generalized hypopigmentation <br> 3. Iris hypopigmentation <br> 4. Prelingual sensorineural hearing impairment <br> 5. Congenital sensorineural hearing impairment <br> 6. Adrenogenital syndrome <br> 7. Hypopigmentation of hair <br> 8. Autosomal dominant contiguous gene syndrome <br> ","phenovalue":"0.57 <br> 0.56 <br> 0.53 <br> 0.51 <br> 0.47 <br> 0.47 <br> 0.45 <br> 0.44 <br> ","phenoindex":"3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Acheiropody <br> ","pheno":"1. Abnormal anterior horn cell morphology <br> 2. Paucity of anterior horn motor neurons <br> 3. Degeneration of anterior horn cells <br> 4. Rudimentary to absent tibiae <br> 5. Rudimentary fibula <br> 6. Abnormal upper motor neuron morphology <br> 7. Rudimentary postaxial polydactyly of hands <br> 8. Motor neuron atrophy <br> 9. Hypoplasia of the uterus <br> 10. Postaxial hand polydactyly <br> ","phenovalue":"0.65 <br> 0.63 <br> 0.59 <br> 0.55 <br> 0.55 <br> 0.53 <br> 0.52 <br> 0.50 <br> 0.50 <br> 0.49 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Askins tumor <br> ","pheno":"1. Glomus jugular tumor <br> 2. Intestinal carcinoid <br> 3. Giant cell tumor of bone <br> 4. Embryonal renal neoplasm <br> ","phenovalue":"0.34 <br> 0.34 <br> 0.33 <br> 0.32 <br> ","phenoindex":"3 <br> 4 <br> 6 <br> 7 <br> "},'+
'{"name":"Respiratory system cancer <br> ","pheno":"1. Neoplasm of the respiratory system <br> 2. Neoplasm of the larynx <br> 3. Neoplasm of the tracheobronchial system <br> 4. Paranasal sinus hypoplasia <br> 5. Neoplasm of the lung <br> ","phenovalue":"0.53 <br> 0.53 <br> 0.52 <br> 0.52 <br> 0.50 <br> ","phenoindex":"3 <br> 4 <br> 5 <br> 7 <br> 10 <br> "},'+
'{"name":"Paranasal sinus cancer <br> ","pheno":"1. Paranasal sinus hypoplasia <br> 2. Absent/hypoplastic paranasal sinuses <br> 3. Aplasia/hypoplasia involving the sinuses <br> 4. Absent frontal sinuses <br> 5. Supraauricular pit <br> 6. Abnormality of the paranasal sinuses <br> 7. Aplasia/hypoplasia of the frontal sinuses <br> ","phenovalue":"0.74 <br> 0.69 <br> 0.68 <br> 0.66 <br> 0.65 <br> 0.64 <br> 0.61 <br> ","phenoindex":"2 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 10 <br> "},'+
'{"name":"Obsolete soft tissue cancer <br> ","pheno":"1. Soft-tissue ossification around the shoulders <br> 2. Soft, doughy skin <br> 3. Soft skin <br> 4. Ectopic ossification <br> 5. 2-4 toe cutaneous syndactyly <br> ","phenovalue":"0.41 <br> 0.35 <br> 0.33 <br> 0.31 <br> 0.30 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> "},'+
'{"name":"Female breast cancer <br> ","pheno":"1. Axillary freckling <br> 2. Axillary pterygium <br> 3. Freckling <br> 4. Abnormal nipple morphology <br> 5. Abnormality of the breast <br> 6. Neoplasm of the breast <br> 7. Multifocal breast carcinoma <br> 8. Breast hypoplasia <br> ","phenovalue":"0.58 <br> 0.55 <br> 0.55 <br> 0.50 <br> 0.49 <br> 0.48 <br> 0.43 <br> 0.43 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 9 <br> 10 <br> "},'+
'{"name":"Organ system cancer <br> ","pheno":"1. Neoplasm by anatomical site <br> 2. Neoplasm of the genitourinary tract <br> 3. Neoplasm by histology <br> 4. Neoplasm of the central nervous system <br> 5. Genital neoplasm <br> 6. Embryonal neoplasm <br> 7. Neoplasm of the nervous system <br> 8. Malignant neoplasm of the central nervous system <br> ","phenovalue":"0.45 <br> 0.34 <br> 0.34 <br> 0.32 <br> 0.31 <br> 0.31 <br> 0.31 <br> 0.30 <br> ","phenoindex":"2 <br> 3 <br> 4 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Cell type cancer <br> ","pheno":"1. Gonadal neoplasm <br> 2. Malignant neoplasm of the central nervous system <br> 3. Genital neoplasm <br> 4. Neoplasm of the genitourinary tract <br> 5. Bilobate gallbladder <br> 6. Hypoplasia of the gallbladder <br> ","phenovalue":"0.49 <br> 0.48 <br> 0.45 <br> 0.44 <br> 0.43 <br> 0.43 <br> ","phenoindex":"2 <br> 4 <br> 6 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Anal canal cancer <br> ","pheno":"1. Anal canal squamous carcinoma <br> 2. Neoplasm of the rectum <br> 3. Anal stenosis <br> 4. Neoplasm of the large intestine <br> 5. Abnormality of the rectum <br> 6. Oropharyngeal squamous cell carcinoma <br> 7. Abnormality of the anus <br> 8. Abnormal large intestine morphology <br> ","phenovalue":"0.88 <br> 0.75 <br> 0.66 <br> 0.64 <br> 0.64 <br> 0.63 <br> 0.54 <br> 0.53 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 7 <br> 9 <br> 10 <br> "},'+
'{"name":"Arc syndrome <br> ","pheno":"1. Arthrogryposis-like hand anomaly <br> 2. Renal fanconi syndrome <br> 3. Intrahepatic cholestasis with episodic jaundice <br> 4. Renal tubular dysfunction <br> 5. Proximal renal tubular acidosis <br> ","phenovalue":"0.53 <br> 0.51 <br> 0.47 <br> 0.42 <br> 0.41 <br> ","phenoindex":"3 <br> 4 <br> 6 <br> 8 <br> 9 <br> "},'+
'{"name":"Aphasia <br> ","pheno":"1. Motor aphasia <br> 2. Neurological speech impairment <br> 3. Speech apraxia <br> 4. Progressive language deterioration <br> 5. Oromotor apraxia <br> 6. Anarthria <br> 7. Abnormality of higher mental function <br> ","phenovalue":"0.81 <br> 0.66 <br> 0.46 <br> 0.44 <br> 0.44 <br> 0.42 <br> 0.41 <br> ","phenoindex":"2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 8 <br> 9 <br> "},'+
'{"name":"Nosophobia <br> ","pheno":"1. Agoraphobia behavior <br> 2. Shyness <br> 3. No social interaction <br> 4. Abnormal fear/anxiety-related behavior <br> ","phenovalue":"0.46 <br> 0.42 <br> 0.35 <br> 0.33 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> "},'+
'{"name":"Lymphatic system cancer <br> ","pheno":"1. Lymph node hypoplasia <br> 2. Metastatic angiosarcoma <br> 3. Popliteal lymph node <br> 4. Lymph node primary follicle <br> 5. Hypoplasia of lymphatic vessels <br> 6. Abnormal lymphatic vessel morphology <br> 7. Lymph node medullary sinus <br> ","phenovalue":"0.62 <br> 0.54 <br> 0.53 <br> 0.51 <br> 0.49 <br> 0.49 <br> 0.49 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 6 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Osteoblastoma <br> ","pheno":"1. Neoplasm of the skeletal system <br> 2. Aneurysmal bone cyst <br> 3. Bone cyst <br> 4. Giant cell tumor of bone <br> 5. Unicameral bone cyst <br> 6. Ungual fibroma <br> 7. Monostotic fibrous dysplasia <br> 8. Absence of the sacrum <br> ","phenovalue":"0.65 <br> 0.53 <br> 0.44 <br> 0.43 <br> 0.38 <br> 0.36 <br> 0.36 <br> 0.36 <br> ","phenoindex":"2 <br> 3 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Benign glioma <br> ","pheno":"1. Subependymal giant-cell astrocytoma <br> 2. Malignant neoplasm of the central nervous system <br> 3. Brainstem glioma <br> 4. Abnormality of the glial cells <br> 5. Cerebellar glioma <br> 6. Abnormality of the astrocytes <br> 7. Neoplasm of the central nervous system <br> ","phenovalue":"0.80 <br> 0.71 <br> 0.70 <br> 0.69 <br> 0.69 <br> 0.67 <br> 0.64 <br> ","phenoindex":"2 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Brain glioma <br> ","pheno":"1. Malignant neoplasm of the central nervous system <br> 2. Abnormality of the glial cells <br> 3. Obsolete glioblastoma <br> 4. Brainstem glioma <br> 5. Neoplasm of the central nervous system <br> 6. Cerebellar glioma <br> ","phenovalue":"0.61 <br> 0.59 <br> 0.58 <br> 0.55 <br> 0.54 <br> 0.53 <br> ","phenoindex":"4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> "},'+
'{"name":"Sensory system cancer <br> ","pheno":"1. Neoplasm of the eye <br> 2. Retinal capillary hemangioma <br> 3. Neoplasm of the middle ear <br> 4. Dilatated internal auditory canal <br> 5. Absent internal auditory canal <br> ","phenovalue":"0.66 <br> 0.59 <br> 0.58 <br> 0.58 <br> 0.58 <br> ","phenoindex":"2 <br> 4 <br> 7 <br> 9 <br> 10 <br> "},'+
'{"name":"Pharynx cancer <br> ","pheno":"1. Abnormality of the aryepiglottic fold <br> 2. Tonsillar ring <br> 3. Lingual tonsil <br> 4. Neoplasm of the pharynx <br> 5. Abnormality of the tonsils <br> 6. Hypoplasia of the epiglottis <br> 7. Hypoplasia of the pharynx <br> 8. Neoplasm of the larynx <br> 9. Neoplasia of the nasopharynx <br> ","phenovalue":"0.53 <br> 0.51 <br> 0.50 <br> 0.46 <br> 0.42 <br> 0.41 <br> 0.41 <br> 0.38 <br> 0.38 <br> ","phenoindex":"2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Integumentary system cancer <br> ","pheno":"1. Squamous cell carcinoma of the skin <br> 2. Nodular melanoma <br> 3. Aplasia/hypoplasia of the sweat glands <br> ","phenovalue":"0.58 <br> 0.53 <br> 0.52 <br> ","phenoindex":"1 <br> 7 <br> 10 <br> "},'+
'{"name":"Akinetopsia <br> ","pheno":"1. Cerebral visual impairment <br> 2. Impaired ocular abduction <br> 3. Impaired ocular adduction <br> 4. Impaired visuospatial constructive cognition <br> 5. Cerebral cortical neurodegeneration <br> ","phenovalue":"0.45 <br> 0.39 <br> 0.39 <br> 0.39 <br> 0.39 <br> ","phenoindex":"2 <br> 6 <br> 7 <br> 8 <br> 9 <br> "},'+
'{"name":"Amusia <br> ","pheno":"1. Obsolete concentric narrowing of visual field <br> 2. Moderate receptive language delay <br> 3. Severe receptive language delay <br> 4. Constriction of peripheral visual field <br> 5. Mild receptive language delay <br> 6. Receptive language delay <br> 7. Delayed speech and language development <br> 8. Mild expressive language delay <br> 9. Severe expressive language delay <br> 10. Moderate expressive language delay <br> ","phenovalue":"0.54 <br> 0.54 <br> 0.53 <br> 0.52 <br> 0.52 <br> 0.51 <br> 0.44 <br> 0.44 <br> 0.44 <br> 0.44 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Anosognosia <br> ","pheno":"1. Hemiplegia/hemiparesis <br> 2. Episodic hemiplegia <br> 3. Oromotor apraxia <br> 4. Cerebral visual impairment <br> 5. Spastic hemiparesis <br> 6. Motor aphasia <br> 7. Frontal lobe dementia <br> 8. Lack of insight <br> ","phenovalue":"0.44 <br> 0.40 <br> 0.40 <br> 0.38 <br> 0.37 <br> 0.37 <br> 0.36 <br> 0.35 <br> ","phenoindex":"1 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 10 <br> "},'+
'{"name":"Color agnosia <br> ","pheno":"1. Abnormality of central sensory function <br> 2. Hyperorality <br> 3. Oromotor apraxia <br> 4. Deuteranopia <br> 5. Dichromacy <br> ","phenovalue":"0.65 <br> 0.54 <br> 0.46 <br> 0.44 <br> 0.42 <br> ","phenoindex":"4 <br> 6 <br> 7 <br> 8 <br> 10 <br> "},'+
'{"name":"Form agnosia <br> ","pheno":"1. Abnormality of central sensory function <br> 2. Hyperorality <br> 3. Oromotor apraxia <br> ","phenovalue":"0.71 <br> 0.57 <br> 0.50 <br> ","phenoindex":"4 <br> 6 <br> 8 <br> "},'+
'{"name":"Phonagnosia <br> ","pheno":"1. Abnormality of central sensory function <br> 2. Sparse lower eyelashes <br> 3. Focal sensory auditory seizure <br> 4. Abnormal lower motor neuron morphology <br> 5. Impaired two-point discrimination <br> ","phenovalue":"0.49 <br> 0.41 <br> 0.41 <br> 0.41 <br> 0.41 <br> ","phenoindex":"5 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Astereognosia <br> ","pheno":"1. Abnormality of central sensory function <br> 2. Somatosensory auras <br> 3. Prolonged somatosensory evoked potentials <br> 4. Abnormality of peripheral somatosensory evoked potentials <br> 5. Abnormality of central somatosensory evoked potentials <br> 6. Focal sensory seizure <br> ","phenovalue":"0.83 <br> 0.82 <br> 0.61 <br> 0.60 <br> 0.59 <br> 0.58 <br> ","phenoindex":"3 <br> 4 <br> 6 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Time agnosia <br> ","pheno":"1. Abnormality of central sensory function <br> 2. Hyperorality <br> 3. Oromotor apraxia <br> ","phenovalue":"0.71 <br> 0.57 <br> 0.50 <br> ","phenoindex":"4 <br> 6 <br> 8 <br> "},'+
'{"name":"Bone disease <br> ","pheno":"1. Skeletal dysplasia <br> 2. Lambdoidal craniosynostosis <br> 3. Bilambdoid synostosis <br> 4. Spondylometaphyseal dysplasia <br> ","phenovalue":"0.52 <br> 0.48 <br> 0.47 <br> 0.47 <br> ","phenoindex":"1 <br> 3 <br> 6 <br> 10 <br> "},'+
'{"name":"Endometritis <br> ","pheno":"1. Hypoplasia of the uterus <br> 2. Uterus didelphys <br> 3. Aplasia of the uterus <br> 4. Enlarged uterus <br> 5. Bicornuate uterus <br> 6. Aplasia/hypoplasia of the uterus <br> 7. Uterine rupture <br> ","phenovalue":"0.37 <br> 0.36 <br> 0.36 <br> 0.36 <br> 0.35 <br> 0.32 <br> 0.31 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> "},'+
'{"name":"Ampulla of vater cancer <br> ","pheno":"1. Oropharyngeal squamous cell carcinoma <br> 2. Squamous cell carcinoma of the skin <br> 3. Duodenal adenocarcinoma <br> 4. Ovarian papillary adenocarcinoma <br> 5. Alveolar cell carcinoma <br> ","phenovalue":"0.68 <br> 0.48 <br> 0.43 <br> 0.43 <br> 0.40 <br> ","phenoindex":"2 <br> 5 <br> 6 <br> 7 <br> 8 <br> "},'+
'{"name":"Duodenum cancer <br> ","pheno":"1. Oropharyngeal squamous cell carcinoma <br> 2. Duodenal aganglionosis <br> 3. Duodenal polyposis <br> 4. Duodenal adenocarcinoma <br> 5. Aganglionosis of the small intestine <br> 6. Abnormality of the duodenum <br> ","phenovalue":"0.63 <br> 0.61 <br> 0.59 <br> 0.57 <br> 0.55 <br> 0.50 <br> ","phenoindex":"2 <br> 3 <br> 4 <br> 5 <br> 7 <br> 9 <br> "},'+
'{"name":"Cycloplegia <br> ","pheno":"1. Periodic hypokalemic paresis <br> 2. Paresis of extensor muscles of the big toe <br> 3. Loss of eyelashes <br> 4. Vocal cord paresis <br> 5. Hypoplasia of the ciliary body <br> 6. Obsolete vocal cord paralysis (caused by tumor impingement) <br> ","phenovalue":"0.59 <br> 0.46 <br> 0.41 <br> 0.40 <br> 0.40 <br> 0.39 <br> ","phenoindex":"1 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> "},'+
'{"name":"Sparganosis <br> ","pheno":"1. Serpiginous stem of antihelix <br> 2. Serpiginous crus of helix <br> ","phenovalue":"0.30 <br> 0.30 <br> ","phenoindex":"1 <br> 2 <br> "},'+
'{"name":"Keratoconus <br> ","pheno":"1. Increased corneal curvature <br> 2. Decreased corneal thickness <br> 3. Abnormality of corneal thickness <br> 4. Abnormality of the curvature of the cornea <br> 5. Severe hydrops fetalis <br> 6. Nonimmune hydrops fetalis <br> 7. Keratoglobus <br> 8. Abnormal cornea morphology <br> ","phenovalue":"0.84 <br> 0.84 <br> 0.81 <br> 0.74 <br> 0.59 <br> 0.59 <br> 0.54 <br> 0.53 <br> ","phenoindex":"2 <br> 3 <br> 4 <br> 5 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Asthenopia <br> ","pheno":"1. Hypermetropia <br> 2. Impaired convergence <br> 3. Abnormality of refraction <br> 4. Abnormality of binocular vision <br> 5. Obsolete congenital exotropia <br> 6. Abnormal stereopsis <br> ","phenovalue":"0.44 <br> 0.42 <br> 0.41 <br> 0.40 <br> 0.40 <br> 0.38 <br> ","phenoindex":"4 <br> 5 <br> 6 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Long bones of lower limb cancer <br> ","pheno":"1. Overtubulated long bones <br> 2. Broad long bones <br> 3. Crumpled long bones <br> 4. Thin long bone diaphyses <br> 5. Protuberances at ends of long bones <br> 6. Anterior bowing of long bones <br> 7. Slender long bones with narrow diaphyses <br> 8. Cortically dense long tubular bones <br> 9. Stenosis of the medullary cavity of the long bones <br> 10. Abnormality of the medullary cavity of the long bones <br> ","phenovalue":"0.73 <br> 0.72 <br> 0.72 <br> 0.70 <br> 0.70 <br> 0.69 <br> 0.68 <br> 0.67 <br> 0.66 <br> 0.64 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Obsolete lower limb cancer <br> ","pheno":"1. Lower limb peromelia <br> 2. Hemiatrophy of lower limb <br> 3. Hemihypertrophy of lower limb <br> 4. Lower limb phocomelia <br> 5. Lower limb hypertonia <br> 6. Hypertrophy of the lower limb <br> 7. Lower limb asymmetry <br> 8. Peromelia <br> 9. Limb hypertonia <br> ","phenovalue":"0.94 <br> 0.94 <br> 0.94 <br> 0.94 <br> 0.94 <br> 0.91 <br> 0.88 <br> 0.88 <br> 0.84 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 10 <br> "},'+
'{"name":"Meckels diverticulum cancer <br> ","pheno":"1. Meckel diverticulum <br> 2. Gastric diverticulum <br> 3. Abnormal ileum morphology <br> 4. Renal diverticulum <br> 5. Left aortic arch with retroesophageal diverticulum of kommerell <br> 6. Cardiac diverticulum <br> 7. Abnormality of the small intestine <br> 8. Solitary bladder diverticulum <br> 9. Muscular cardiac diverticulum <br> ","phenovalue":"0.94 <br> 0.80 <br> 0.79 <br> 0.74 <br> 0.72 <br> 0.68 <br> 0.63 <br> 0.61 <br> 0.61 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Ileum cancer <br> ","pheno":"1. Meckel diverticulum <br> 2. Abnormal ileum morphology <br> 3. Gastric diverticulum <br> 4. Renal diverticulum <br> 5. Abnormality of the small intestine <br> 6. Left aortic arch with retroesophageal diverticulum of kommerell <br> 7. Cardiac diverticulum <br> 8. Solitary bladder diverticulum <br> ","phenovalue":"0.86 <br> 0.82 <br> 0.73 <br> 0.67 <br> 0.65 <br> 0.65 <br> 0.61 <br> 0.54 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 6 <br> 7 <br> 8 <br> 10 <br> "},'+
'{"name":"Small intestine cancer <br> ","pheno":"1. Meckel diverticulum <br> 2. Aganglionosis of the small intestine <br> 3. Neoplasm of the small intestine <br> 4. Hypoplasia of the small intestine <br> 5. Abnormal ileum morphology <br> 6. Abnormality of the small intestine <br> 7. Oropharyngeal squamous cell carcinoma <br> 8. Duodenal aganglionosis <br> ","phenovalue":"0.61 <br> 0.60 <br> 0.57 <br> 0.57 <br> 0.57 <br> 0.56 <br> 0.54 <br> 0.53 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 8 <br> 10 <br> "},'+
'{"name":"Intestinal cancer <br> ","pheno":"1. Neoplasm of the large intestine <br> 2. Anal canal squamous carcinoma <br> 3. Neoplasm of the rectum <br> 4. Meckel diverticulum <br> 5. Aganglionosis of the small intestine <br> ","phenovalue":"0.56 <br> 0.55 <br> 0.53 <br> 0.52 <br> 0.51 <br> ","phenoindex":"1 <br> 4 <br> 7 <br> 8 <br> 9 <br> "},'+
'{"name":"Osteonecrosis <br> ","pheno":"1. Avascular necrosis <br> 2. Abnormality of skeletal physiology <br> 3. Hypoplasia of the femoral head <br> 4. Broad femoral head <br> 5. Flattened femoral head <br> 6. Aplasia of the femoral head <br> 7. Aplasia/hypoplasia involving the femoral head and neck <br> 8. Multicentric femoral head ossification <br> 9. Delayed femoral head ossification <br> 10. Dysplasia of the femoral head <br> ","phenovalue":"0.68 <br> 0.55 <br> 0.53 <br> 0.52 <br> 0.52 <br> 0.51 <br> 0.49 <br> 0.48 <br> 0.48 <br> 0.47 <br> ","phenoindex":"1 <br> 2 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Skin lipoma <br> ","pheno":"1. Frontal cutaneous lipoma <br> 2. Sacral lipoma <br> 3. Subcutaneous lipoma <br> 4. Lipomatous tumor <br> 5. Neoplasm of fatty tissue <br> 6. Multiple lipomas <br> 7. Abnormality of subcutaneous fat tissue <br> 8. Painful subcutaneous lipomas <br> 9. Neoplasm of the skin <br> ","phenovalue":"0.84 <br> 0.81 <br> 0.72 <br> 0.72 <br> 0.71 <br> 0.62 <br> 0.61 <br> 0.56 <br> 0.52 <br> ","phenoindex":"1 <br> 3 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
'{"name":"Osteomyelitis <br> ","pheno":"1. Salmonella osteomyelitis <br> 2. Mandibular osteomyelitis <br> 3. Obsolete chronic recurrent multifocal osteomyelitis <br> 4. Obsolete osteomyelitis due to immunodeficiency <br> 5. Obsolete acral ulceration and osteomyelitis leading to autoamputation of digits <br> 6. Autoamputation of digits <br> 7. Abnormality of skeletal physiology <br> 8. Autoamputation <br> 9. Skin ulcer <br> ","phenovalue":"0.85 <br> 0.79 <br> 0.69 <br> 0.65 <br> 0.63 <br> 0.55 <br> 0.55 <br> 0.51 <br> 0.51 <br> ","phenoindex":"1 <br> 2 <br> 4 <br> 5 <br> 6 <br> 7 <br> 8 <br> 9 <br> 10 <br> "},'+
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{data:{source:'48',target:'72'}},
{data:{source:'49',target:'50'}},
{data:{source:'49',target:'55'}},
{data:{source:'49',target:'57'}},
{data:{source:'49',target:'71'}},
{data:{source:'51',target:'52'}},
{data:{source:'51',target:'53'}},
{data:{source:'51',target:'54'}},
{data:{source:'52',target:'53'}},
{data:{source:'52',target:'54'}},
{data:{source:'53',target:'54'}},
{data:{source:'53',target:'63'}},
{data:{source:'53',target:'87'}},
{data:{source:'54',target:'63'}},
{data:{source:'54',target:'87'}},
{data:{source:'55',target:'57'}},
{data:{source:'55',target:'71'}},
{data:{source:'56',target:'58'}},
{data:{source:'56',target:'59'}},
{data:{source:'57',target:'71'}},
{data:{source:'58',target:'59'}},
{data:{source:'61',target:'78'}},
{data:{source:'62',target:'64'}},
{data:{source:'63',target:'70'}},
{data:{source:'63',target:'74'}},
{data:{source:'63',target:'87'}},
{data:{source:'63',target:'92'}},
{data:{source:'64',target:'65'}},
{data:{source:'65',target:'67'}},
{data:{source:'66',target:'69'}},
{data:{source:'67',target:'73'}},
{data:{source:'67',target:'84'}},
{data:{source:'68',target:'69'}},
{data:{source:'69',target:'91'}},
{data:{source:'72',target:'83'}},
{data:{source:'73',target:'82'}},
{data:{source:'73',target:'83'}},
{data:{source:'74',target:'87'}},
{data:{source:'75',target:'76'}},
{data:{source:'75',target:'77'}},
{data:{source:'75',target:'88'}},
{data:{source:'76',target:'77'}},
{data:{source:'78',target:'84'}},
{data:{source:'78',target:'88'}},
{data:{source:'82',target:'83'}},
{data:{source:'91',target:'93'}},
]
},
});
var layout = cy.layout({
name: 'cose',
animate: 'end',
animationEasing: 'ease-out',
animationDuration: 1000,
nestingFactor: 1.5,
randomize: false,
});
layout.run();
var ctx = document.getElementById('myChart').getContext('2d');
window.chart = new Chart(ctx, {
// The type of chart we want to create
type: 'bar',
// The data for our dataset
data: {
labels: ["1", "2", "3", "4", "5", "6"],
datasets: [{
label: "Ranked Relevance of Phenotypes",
backgroundColor: 'rgb(255, 99, 132)',
borderColor: 'rgb(255, 99, 132)',
data: [1, 1, 1, 1, 1, 2],
}]
},
// Configuration options go here
options: {
layout: {
padding: {
left: 0,
right: 0,
top: 100,
bottom: 0
}
}
}
});
var ctx = document.getElementById('pieChart').getContext('2d');
var dynamicColors = function() {
var r = 125+Math.floor(Math.random() * 125);
var g = 125+Math.floor(Math.random() * 125);
var b = 125+Math.floor(Math.random() * 125);
return "rgb(" + r + "," + g + "," + b + ")";
};
var coloR = [];
for (var i = 0; i < 6; i++) {
coloR.push(dynamicColors());
}
var myPieChart = new Chart(ctx,{
type: 'pie',
data: {
labels: ["1", "2", "3", "4", "5", "6"],
datasets: [{
label: "Ranked Relevance of Phenotypes",
backgroundColor: coloR,
data: [1, 1, 1, 1, 1, 2],
}]
},
layout: {
padding: {
left: 0,
right: 0,
top: 0,
bottom: 0
}
}
});
for (var i = 0; i < newdata.length; i++) {
var option = document.createElement("option");
$(option).val(i);
$(option).text(obj.sites[i].name.substring(0,obj.sites[i].name.length-5));
$('#dname').append(option);
}
$("#dname").append($("#dname option").remove().sort(function(a, b) {
var at = $(a).text(), bt = $(b).text();
return (at > bt)?1:((at < bt)?-1:0);
}));
$('#dname').val('-1');
for (var i = 0; i < phenodata.length; i++) {
var option = document.createElement("option");
$(option).val(i);
$(option).text(phenodata[i]);
$('#pheno1').append(option);
}
$("#pheno1").append($("#pheno1 option").remove().sort(function(a, b) {
var at = $(a).text(), bt = $(b).text();
return (at > bt)?1:((at < bt)?-1:0);