-
Notifications
You must be signed in to change notification settings - Fork 5
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Addressing cran failing issues #160
Open
juniperlsimonis
wants to merge
23
commits into
main
Choose a base branch
from
patch_cran
base: main
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Open
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Codecov ReportPatch has no changes to coverable lines.
📢 Thoughts on this report? Let us know!. |
juniperlsimonis
changed the title
adding github workflows
Addressing cran failing issues
Sep 16, 2023
move vignette out of folder and rbuildignore it
wiley online library does some anti-text scraping thing now that apparently throws a 403 when httr tries to GET it, using alternative links for a few papers
@diazrenata this is my attempt to get the precompiling approach to work following https://ropensci.org/blog/2019/12/08/precompute-vignettes/. the vignette needs to be pre built by collowing the precompile.R script in the paper_comparison folder, which is ignored for the R build
so all the figures are in one folder
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
build issue associated with downloading resources for vignette building
Quitting from lines 201-225 [download pre-generated model outputs] (paper-comparison.Rmd)
Error: processing vignette 'paper-comparison.Rmd' failed with diagnostics:
cannot open URL 'https://raw.githubusercontent.com/weecology/LDATS-replications/master/output/ldats_ldats.RDS'
--- failed re-building ‘paper-comparison.Rmd’
converting to precomputing approach following https://ropensci.org/blog/2019/12/08/precompute-vignettes/
also, because this is the first update in a bit, using github actions for replacing travis