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fix glitches
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wegnerce committed Jun 30, 2023
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Expand Up @@ -18,7 +18,7 @@ A reference genome stored in `resources/` is bisulfite-treated _in silico_ with

Read pairs are subsequently mapped onto the bisulfite-treated genome, alignments with identical mapping positions are removed. Methylations are extracted for all three contexts (CpG, CHH, CHX) and used to generate a `.bedGraph` and coverage file. The latter can be used for downstream methylation analysis.

The below DAG graph outlines the different processes of the workflow, exemplarily for two file pairs La.1* and Nd.1*.
The below DAG graph outlines the different processes of the workflow.

![DAG of smk_emseq.](dag.svg)

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