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params.yml
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params.yml
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alg:
exclude_loi: true
num_iter: 10
shape: # Shape feature and Anisotropic search region
shape_feature_type: 1
shape_metric_type: "cosine"
to_normalized: true
shape_score_type: "gaussian" # "gaussian" or "feature" for rescaling
std_factor_shape: 1. # Larger value => smaller anisotropic searching region # 0.5
radius_geodesic_max : 50. # Larger value => larger geodesic circle, last iter
radius_geodesic_min : 20. # Larger value => larger geodesic circle, first iter
texture: # Texture feature and Local Texture Patch
threshold_texture_signal : 100 # Larger value => more LOIs to be excluded, value is empiracally determined
texture_metric_type : "cosine"
echo_taus : [0.01212, 0.02424, 0.04848] # NOTE: 0.00606 => support radius ~5 mm
echo_support_radii : [10, 20, 40] # support radius in mm, corresponding to taus, multi-FOV
echo_fov_weights : [0.4, 0.3, 0.3]
echo_distance_type : 0 # geodesic
anchor: # Anchor
std_factor_within_lois_texture : 1. # Larger value => less LOIs to be anchored
threshold_texture_score : 0.975 # Larger value => less LOIs to be anchored # 0.95
threshold_texture_multiplier : 0.995 # Larger value => less LOIs to be anchored
std_factor_unambiguous_texture : 1.5 # 1 # Larger value => less LOIs to be anchored (more vertices to be considered, possibly more clusters)
factor_dist_unambiguous_texture : 1.5 # 2 # Larger value => more LOI to be anchored (tolerance for deviation among clusters)
threshold_unambiguous_texture : 0.9 # Larger value => less LOIs to be anchored, same effect as "threshold_texture_score"
threshold_shape_texture_consensus : 1. # in mm, larger value => more LOI to be anchored
threshold_consensus_multiplier : 1.2 # Larger value => more LOIs to be anchored
combined_score: # Score weights for combined score
combined_method : "add"
score_weights : [0.5, 0.5] # (shape, texture)
echo:
bin: "/home/weilunhuang/misha/ECHODescriptors/Bin/Linux/GetDescriptor" # absolute path to the GetDescriptor
multi_vert_num: 2000