Skip to content

Fix error handling in analysis.py #361

Fix error handling in analysis.py

Fix error handling in analysis.py #361

name: Big Structure Tests
on:
push:
branches:
- master
paths:
- '.github/workflows/big-structure-run-tests.yml'
- 'big-structure/**'
pull_request:
paths:
- '.github/workflows/big-structure-run-tests.yml'
- 'big-structure/**'
jobs:
build:
runs-on: ubuntu-latest
steps:
- name: Checkout de-stress
uses: actions/checkout@v2
- name: Download dependencies
run: |
python -m venv headless_destress
source headless_destress/bin/activate
cp .env-headless-testing .env-headless
pip install -r requirements.txt
cd dependencies_for_de-stress/
git clone --branch v2024.18-dev62107 https://github.com/RosettaCommons/rosetta.git
echo "Rosetta has been successfully downloaded."
cd ../
docker compose -f headless-compose.yml build
current_dir=$(pwd)
echo "Current dir: $current_dir"
echo "Building DE-STRESS dependencies. Rosetta will take a few hours to compile."
docker run --rm -v /home/runner/work/de-stress/de-stress/dependencies_for_de-stress/:/dependencies_for_de-stress de-stress-big-structure:latest sh build_dependencies_tests.sh
- name: Test `big-structure`
run: |
docker run --rm -v /home/runner/work/de-stress/de-stress/dependencies_for_de-stress/:/dependencies_for_de-stress/ \
--env-file .env-headless \
de-stress-big-structure:latest \
poetry run pytest -m "not rosetta"