Models 2022-04

All models except timed use the following:

poetry run make-frame-dataset /scratch/datasets/biounit/ -d benchmarking_set.csv -e .pdb1.gz --voxels-per-side 21 --frame-edge-length 21 -g True -p 35 -n benchmark_set -v -r -z -cb True -ae CNOCBCA  --compression_gzip True -o /scratch/timed_dataset/

TIMED uses the following settings:

poetry run make-frame-dataset ../../shared/datasets/biounit/ -e .pdb1.gz --pieces-filter-file /home/shared/datasets/pisces/cullpdb_pc90_res3.0_R1.0_d200702_chains40583 --voxels-per-side 21 --frame-edge-length 13 -g False -p 35 -n pisces_expanded -v -r -z -cb True -ae CNOCBCA -b blacklist.csv