-
Notifications
You must be signed in to change notification settings - Fork 3
/
swagger.yml
7961 lines (7912 loc) · 211 KB
/
swagger.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
---
basePath: "/api/v1"
definitions:
containerInfo:
"$schema": http://json-schema.org/draft-04/schema#
description: Information about a running instance's underlying container
properties:
containerId:
description: internal unique identifier
type: string
example: 397914f6bf9e4d153dd86
containerPath:
description: Path within the container where the application can be reached
type: string
example: user/.../login?token=...
digest:
description: Hash/digest of the running container image
type: string
example: sha256:198246816212941281ab1243de09c9adbca92
host:
description: Hostname where the container can be reached
type: string
example: 172.17.0.1
imageId:
description: internal unique identifier of the chosen image
type: string
example: 58caa69f00f4d26cbd9fe01d
mountPoint:
description: Path within the container where data should be mounted
type: string
example: “/var/lib/docker/volumes/58caa69f9fcbde0001/_data”
volumeName:
description: Name/indentifier of the associated Docker volume
type: string
example: 58ca9fcbde0001df4d26_foo
containerConfig:
"$schema": http://json-schema.org/draft-04/schema#
description: A subset of docker runtime configuration used for Tales
properties:
command:
description: Command to run when the container starts
type: string
cpuShares:
type: string
environment:
description: List of environment variables passed to a container
items:
description: Environment variable, in the form KEY=val
type: string
type: array
memLimit:
type: string
port:
description: The exposed internal port that is going to be accessbile through
HTTP(S)
type: integer
targetMount:
description: Path where the Whole Tale filesystem will be mounted
type: string
urlPath:
description: Subpath appended to the randomly generated container URL
type: string
user:
description: Username used inside the running container
type: string
title: containerConfig
type: object
dataMap:
description: A container with a basic information about a set of external data
resources.
example:
dataId: urn:uuid:42969280-e11c-41a9-92dc-33964bf785c8
doi: 10.5063/F1Z899CZ
name: Data from a dynamically downscaled projection of past and future microclimates
covering North America from 1980-1999 and 2080-2099
repository: DataONE
size: 178679
properties:
dataId:
description: External dataset identificator, such as URL.
type: string
doi:
description: Digital Object Identifier
type: string
name:
description: A user-friendly name. Defaults to the name provided by an external
repository.
type: string
repository:
description: Name of a data repository holding the dataset.
type: string
size:
description: Size of the dataset in bytes.
type: integer
required:
- dataId
- repository
- doi
- name
- size
type: object
dataSet:
"$schema": http://json-schema.org/draft-04/schema#
items:
"$schema": http://json-schema.org/draft-04/schema#
description: A schema representing data elements used in DMS dataSets
properties:
itemId:
description: ID of a Girder item or a Girder folder
type: string
mountPath:
description: An absolute path where the item/folder are mounted in the EFS
type: string
required:
- itemId
- mountPath
title: dataSetItem
type: object
title: A list of resources with a corresponding mount points in the ESF
type: array
dataset:
description: Object representing registered data.
properties:
_id:
description: internal unique identifier
type: string
_modelType:
description: Model of the object.
enum:
- folder
- item
type: string
created:
description: The time when the tale was created.
format: date-time
type: string
creatorId:
description: A unique identifier of the user that created the tale.
type: string
description:
type: string
identifier:
description: External, unique identifier
type:
- string
- 'null'
name:
description: A user-friendly name
type: string
provider:
description: Name of the provider
enum:
- DataONE
- HTTP
- Globus
type: string
size:
description: Total size of the dataset in bytes.
type: integer
updated:
description: The last time when the tale was modified.
format: date-time
type: string
required:
- _id
- _modelType
fileMap:
description: A container with a list of filenames and sizes from a DataONE repository.
example:
? 'Doctoral Dissertation Research: Mapping Community Exposure to Coastal Climate
Hazardsin the Arctic: A Case Study in Alaska''s North Slope'
: Arctic Slope Shoreline Change Risk Spatial Data Model, 2015-16:
fileList:
- science_metadata.xml:
size: 7577
Arctic Slope Shoreline Change Susceptibility Spatial Data Model, 2015-16:
fileList:
- science_metadata.xml:
size: 10491
Local community verification of shoreline change risks along the Alaskan Arctic Oceancoast (North Slope).:
fileList:
- science_metadata.xml:
size: 14250
North Slope Borough shoreline change risk WebGIS usability workshop.:
fileList:
- science_metadata.xml:
size: 7940
fileList:
- science_metadata.xml:
size: 8961
properties:
name:
description: The name of the data file.
type: string
size:
description: Size of the file in bytes.
type: integer
required:
- name
- fileList
type: object
image:
description: Object representing a WT Image.
example:
_accessLevel: 2
_id: 5873dcdbaec030000144d233
_modelType: image
created: '2017-01-09T18:56:27.262000+00:00'
creatorId: 18312dcdbaec030000144d233
description: Jupyter Notebook environment
name: Jupyter Notebook
parentId: 'null'
public: true
tags:
- jupyter
- py3
updated: '2017-01-10T16:15:17.313000+00:00'
properties:
_id:
description: internal unique identifier
type: string
config:
"$ref": "#/definitions/containerConfig"
created:
description: The time when the image was created.
format: date-time
type: string
creatorId:
description: A unique identifier of the user that created the image.
type: string
description:
type: string
icon:
description: A URL with an image icon
type: string
iframe:
description: If 'true', the tale can be embedded in an iframe
type: boolean
name:
description: A user-friendly name
type: string
parentId:
description: ID of a previous version of the Image
type: string
public:
default: true
description: If set to true the image can be accessed by anyone
type: boolean
tags:
description: A human readable identification of the environment.
items:
type: string
type: array
updated:
description: The last time when the image was modified.
format: date-time
type: string
required:
- _id
- name
- tags
- parentId
instance:
example:
_accessLevel: 2
_id: 587506670791d3000121b68d
_modelType: instance
containerInfo:
containerId: 397914f6bf9e4d153dd86
containerPath: user/.../login?token=...
digest: sha256:198246816212941281ab1243de09c9adbca92
host: 172.17.0.1
imageId: 58caa69f00f4d26cbd9fe01d
mountPoint: "/var/lib/docker/volumes/58caa69f9fcbde0001/_data"
volumeName: 58ca9fcbde0001df4d26_foo
created: '2017-04-07T17:04:04.777000+00:00'
creatorId: 57c099af86ed1d0001733722
iframe: true
lastActivity: '2017-04-07T17:04:04.777000+00:00'
name: test
status: 0
taleId: 58caa69f9fcbde0001df4d26
url: user/hkhHpMloA4Pp/login?token=babf41833c9641a4a92bece48a34e5b7
id: instance
properties:
_accessLevel:
format: int32
type: integer
_id:
type: string
_modelType:
type: string
containerInfo:
"$ref": "#/definitions/containerInfo"
created:
format: date
type: string
creatorId:
type: string
iframe:
description: If "true", instance can be embedded in an iframe
type: boolean
lastActivity:
format: date
type: string
name:
type: string
status:
allowEmptyValue: false
format: int32
maximum: 1
minimum: 0
type: integer
taleId:
type: string
url:
type: string
required:
- _accessLevel
- _id
- _modelType
- containerId
- containerPath
- created
- digest
- folderId
- frontendId
- imageId
- lastActivity
- mountPoint
- status
- userId
- when
type: object
tale:
definitions:
containerConfig:
"$schema": http://json-schema.org/draft-04/schema#
description: A subset of docker runtime configuration used for Tales
properties:
command:
description: Command to run when the container starts
type: string
cpuShares:
type: string
environment:
description: List of environment variables passed to a container
items:
description: Environment variable, in the form KEY=val
type: string
type: array
memLimit:
type: string
port:
description: The exposed internal port that is going to be accessbile
through HTTP(S)
type: integer
targetMount:
description: Path where the Whole Tale filesystem will be mounted
type: string
urlPath:
description: Subpath appended to the randomly generated container URL
type: string
user:
description: Username used inside the running container
type: string
title: containerConfig
type: object
dataSet:
"$schema": http://json-schema.org/draft-04/schema#
items:
"$schema": http://json-schema.org/draft-04/schema#
description: A schema representing data elements used in DMS dataSets
properties:
_modelType:
description: Either a Girder item or a Girder folder
enum:
- item
- folder
type: string
itemId:
description: ID of a Girder item or a Girder folder
type: string
mountPath:
description: An absolute path where the item/folder are mounted in the
EFS
type: string
required:
- itemId
- mountPath
title: dataSetItem
type: object
title: A list of resources with a corresponding mount points in the ESF
type: array
imageInfo:
"$schema": http://json-schema.org/draft-04/schema#
description: Attributes describing a Tale image
properties:
created:
format: date-time
type: string
digest:
type: string
fullName:
type: string
jobId:
type: string
title: imageInfo
type: object
publishInfo:
"$schema": http://json-schema.org/draft-04/schema#
items:
"$schema": http://json-schema.org/draft-04/schema#
description: A schema representing publishing information
properties:
date:
description: Date Tale was published.
format: date-time
type: string
pid:
description: A unique identifier assigned to this tale from a publishing
source.
type:
- string
- 'null'
uri:
description: A URI pointing to the location of the published Tale.
type:
- string
- 'null'
required:
- pid
- uri
- date
title: publishInfo
type: object
title: list of publishInfos
type: array
description: Object representing a Tale.
example:
_accessLevel: 2
_id: 5c4887409759c200017b2310
_modelType: tale
authors:
- firstName: Kacper
lastName: Kowalik
orcid: https://www.orcid.org/0000-0003-1709-3744
- firstName: Tommy
lastName: Thelen
orcid: https://www.orcid.org/0000-0003-1709-3754
category: science
config: {}
copyOfTale: 5c4887409759c200017b231f
created: '2019-01-23T15:24:48.217000+00:00'
creatorId: 5c4887149759c200017b22c0
dataSet:
- itemId: 5c4887389759c200017b230e
mountPath: illustris.jpg
description: "#### Markdown Editor"
doi: doi:x.xx.xxx
folderId: 5c4887409759c200017b2316
format: 4
icon: https://raw.githubusercontent.com/whole-tale/jupyter-base/master/squarelogo-greytext-orangebody-greymoons.png
iframe: true
illustration: https://raw.githubusercontent.com/whole-tale/dashboard/master/public/images/demo-graph2.jpg
imageId: 5c4886279759c200017b22a3
imageInfo:
digest: sha256:9aaece098841b13cdc64ea6756767357f5c9eb1ab10f67b9e67a90960b894053
fullName: registry.local.wholetale.org/5c3cd7faa697bf0001ce6cc0-1547494547
jobId: 5873dcdbaec03000014x123
license: CC0-1.0
narrative: []
narrativeId: 5c4887409759c200017b2319
public: false
publishInfo:
- date: '2019-01-23T15:48:17.476000+00:00'
pid: urn:uuid:939e48ec-1107-45d9-baa7-05cef08e51cd
uri: https://dev.nceas.ucsb.edu/view/urn:uuid:8ec-1107-45d9-baa7-05cef08e51cd
title: My Tale
updated: '2019-01-23T15:48:17.476000+00:00'
properties:
_id:
description: internal unique identifier
type: string
authors:
description: A list of authors that are associated with the Tale
items:
description: A JSON structure representing a Tale author.
type: object
type: array
category:
description: Keyword describing topic of the Tale
type: string
config:
"$ref": "#/definitions/containerConfig"
copyOfTale:
description: An ID of a source Tale, if the Tale is a copy.
type:
- string
- 'null'
created:
description: The time when the tale was created.
format: date-time
type: string
creatorId:
description: A unique identifier of the user that created the tale.
type: string
dataSet:
"$ref": "#/definitions/tale/definitions/dataSet"
description:
description: The description of the Tale (Markdown)
type:
- string
- 'null'
folderId:
description: ID of a folder containing copy of tale['dataSet']
type: string
format:
description: Tale format specification
type: integer
icon:
description: A URL to an image icon
type: string
iframe:
description: If 'true', the tale can be embedded in an iframe
type: boolean
illustration:
description: A URL to an image depicturing the content of the Tale
type: string
imageId:
description: ID of a WT Image used by the Tale
type: string
imageInfo:
"$ref": "#/definitions/tale/definitions/imageInfo"
license:
description: The license that the Tale is under
type: string
narrative:
description: List of Girder Items containing Tale's narrative
items:
description: Girder Item id
type: string
type: array
narrativeId:
description: ID of a folder containing copy of tale['narrative']
type: string
public:
default: true
description: If set to true the Tale is accessible by anyone.
type: boolean
publishInfo:
"$ref": "#/definitions/tale/definitions/publishInfo"
title:
description: Title of the Tale
type: string
updated:
description: The last time when the tale was modified.
format: date-time
type: string
workspaceId:
description: ID of a folder containing Tale's workspace
type: string
required:
- dataSet
- imageId
host: girder.local.wholetale.org
info:
title: Girder REST API
version: 2.5.0
paths:
"/api_key":
get:
description: Only site administrators may list keys for other users. If no userId
parameter is passed, lists keys for the current user.
operationId: api_key_listKeys
parameters:
- _lower: false
_strip: false
_upper: false
description: ID of the user whose keys to list.
in: query
name: userId
required: false
type: string
- default: 50
description: Result set size limit.
format: int32
in: query
name: limit
required: false
type: integer
- default: 0
description: Offset into result set.
format: int32
in: query
name: offset
required: false
type: integer
- _lower: false
_strip: true
_upper: false
default: name
description: Field to sort the result set by.
in: query
name: sort
required: false
type: string
- default: 1
description: 'Sort order: 1 for ascending, -1 for descending.'
enum:
- 1
- -1
format: int32
in: query
name: sortdir
required: false
type: integer
responses:
'200':
description: Success
'400':
description: A parameter was invalid.
summary: List API keys for a given user.
tags:
- api_key
post:
operationId: api_key_createKey
parameters:
- _lower: false
_strip: true
_upper: false
default: ''
description: Name for the API key.
in: query
name: name
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: JSON list of scopes for this key.
in: query
name: scope
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: Max number of days tokens created with this key will last.
in: query
name: tokenDuration
required: false
type: string
- default: true
description: Whether the key is currently active.
in: query
name: active
required: false
type: boolean
responses:
'200':
description: Success
'400':
description: A parameter was invalid.
summary: Create a new API key.
tags:
- api_key
"/api_key/token":
post:
operationId: api_key_createToken
parameters:
- _lower: false
_strip: true
_upper: false
description: The API key.
in: query
name: key
required: true
type: string
- description: Number of days that the token should last.
format: float
in: query
name: duration
required: false
type: number
responses:
'200':
description: Success
'400':
description: A parameter was invalid.
summary: Create a token from an API key.
tags:
- api_key
"/api_key/{id}":
delete:
operationId: api_key_deleteKey
parameters:
- _lower: false
_strip: false
_upper: false
description: The ID of the API key to delete.
in: path
name: id
required: true
type: string
responses:
'200':
description: Success
'400':
description: A parameter was invalid.
summary: Delete an API key.
tags:
- api_key
put:
operationId: api_key_updateKey
parameters:
- _lower: false
_strip: false
_upper: false
description: The ID of the API key.
in: path
name: id
required: true
type: string
- _lower: false
_strip: true
_upper: false
description: Name for the key.
in: query
name: name
required: false
type: string
- _lower: false
_strip: false
_upper: false
default: []
description: JSON list of scopes for this key.
in: query
name: scope
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: Max number of days tokens created with this key will last.
in: query
name: tokenDuration
required: false
type: string
- description: Whether the key is currently active.
in: query
name: active
required: false
type: boolean
responses:
'200':
description: Success
'400':
description: A parameter was invalid.
summary: Update an API key.
tags:
- api_key
"/assetstore":
get:
operationId: assetstore_find
parameters:
- default: 50
description: Result set size limit.
format: int32
in: query
name: limit
required: false
type: integer
- default: 0
description: Offset into result set.
format: int32
in: query
name: offset
required: false
type: integer
- _lower: false
_strip: true
_upper: false
default: name
description: Field to sort the result set by.
in: query
name: sort
required: false
type: string
- default: 1
description: 'Sort order: 1 for ascending, -1 for descending.'
enum:
- 1
- -1
format: int32
in: query
name: sortdir
required: false
type: integer
responses:
'200':
description: Success
'400':
description: A parameter was invalid.
'403':
description: You are not an administrator.
summary: List assetstores.
tags:
- assetstore
post:
description: You must be an administrator to call this.
operationId: assetstore_createAssetstore
parameters:
- _lower: false
_strip: false
_upper: false
description: Unique name for the assetstore.
in: query
name: name
required: true
type: string
- description: Type of the assetstore.
format: int32
in: query
name: type
required: true
type: integer
- _lower: false
_strip: false
_upper: false
description: Root path on disk (for filesystem type).
in: query
name: root
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: File creation permissions (for filesystem type).
in: query
name: perms
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: Database name (for GridFS type)
in: query
name: db
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: Mongo host URI (for GridFS type)
in: query
name: mongohost
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: Replica set name (for GridFS type)
in: query
name: replicaset
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: Shard the collection (for GridFS type). Set to "auto" to set
up sharding.
in: query
name: shard
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: The S3 bucket to store data in (for S3 type).
in: query
name: bucket
required: false
type: string
- _lower: false
_strip: false
_upper: false
default: ''
description: Optional path prefix within the bucket under which files will
be stored (for S3 type).
in: query
name: prefix
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: The AWS access key ID to use for authentication (for S3 type).
in: query
name: accessKeyId
required: false
type: string
- _lower: false
_strip: false
_upper: false
description: The AWS secret key to use for authentication (for S3 type).
in: query
name: secret
required: false
type: string
- _lower: false
_strip: false
_upper: false
default: ''
description: The S3 service host (for S3 type). Default is s3.amazonaws.com. This
can be used to specify a protocol and port as well using the form [http[s]://](host
domain)[:(port)]. Do not include the bucket name here.
in: query
name: service
required: false
type: string
- default: false
description: If this assetstore is read-only, set this to true.
in: query
name: readOnly
required: false
type: boolean
- _lower: false
_strip: false
_upper: false
default: us-east-1
description: The AWS region to which the S3 bucket belongs.
in: query
name: region
required: false
type: string
- description: The credentials for connecting to S3 will be inferred by Boto
rather than explicitly passed. Inferring credentials will ignore accessKeyId
and secret.
in: query
name: inferCredentials
required: false
type: boolean
responses:
'200':
description: Success
schema:
"$ref": "#/definitions/Assetstore"
'400':
description: A parameter was invalid.
'403':
description: You are not an administrator.
summary: Create a new assetstore.
tags:
- assetstore
"/assetstore/{id}":
delete:
description: This will fail if there are any files in the assetstore.
operationId: assetstore_deleteAssetstore
parameters:
- _lower: false
_strip: false
_upper: false
description: The ID of the document.
in: path
name: id
required: true
type: string
responses:
'200':
description: Success
'400':
description: |-
A parameter was invalid.
The assetstore is not empty.
'403':
description: You are not an administrator.
summary: Delete an assetstore.
tags:
- assetstore
get:
operationId: assetstore_getAssetstore
parameters:
- _lower: false
_strip: false
_upper: false
description: The ID of the document.
in: path
name: id
required: true
type: string
responses:
'200':
description: Success
'400':
description: A parameter was invalid.
'403':
description: You are not an administrator.
summary: Get information about an assetstore.