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updated README
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wikiselev committed Aug 20, 2014
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Expand Up @@ -18,4 +18,7 @@ Workflow:
2. Copy your model .cps file in the 'model' directory (don't forget to remove example files from it) together with 'experiment.txt' file
3. From root directory run 'sh 1-run-coparaest.sh n c', where n is number of parameter estimations (must be > 10) and c is your cluster queuing system ('sge' or 'lsf'). This will start n jobs on your cluster. All output will appear in 'results' folder
4. Wait until all n jobs are finished and then run 'sh 2-summarise-results.sh'. This will summarize all estimation objectives values in 'results/obj-values.txt' and also produce 'plots-top-10-obj-vals.pdf' file in the same folder. This file contains time courses plots for the best 10 objective values
5. Looking at the plots choose the best fit and obtain the model file with necessary parameter values by 'sh 3-select-your-model.sh i', where i is the index of the best fit estimation
5. Looking at the plots choose the best fit and obtain the model file with necessary parameter values by 'sh 3-select-your-model.sh i', where i is the index of the best fit estimation

Authors: Vladimir Kiselev, Marija Jankovic
Acknowledgments: Martina Froehlich

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