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The example to accompany the JOVE paper: "Connecting 3D Simulations to the Metaverse: A FAIR Workflow Based Approach"

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williamjsmith15/galaxy-omniverse-example

 
 

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omniverse-workflows-fusion

Setup:

  1. If on Windows install WSL2 and Ubuntu 20.04 LTS

  2. Install Docker (or Docker Desktop on Windows)

  3. Run the start script:

    ./start-galaxy.sh

To modify or add tools:

  1. Create / modify tools

  2. Add tool to the tool_conf.xml file in the galaxy-config folder (see the example in the xml file for the openmc tool)

  3. Restart the galaxy container:

    ./restart-galaxy.sh

Common issues:

  • On windows getting permissions errors, remove special characters:

    sed -i -e 's/\r$//' start-galaxy.sh

  • Then sort permissions:

    chmod +x start-galaxy.sh

  • And run as normal:

    ./start-galaxy.sh

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The example to accompany the JOVE paper: "Connecting 3D Simulations to the Metaverse: A FAIR Workflow Based Approach"

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