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zning-sanger authored Oct 18, 2019
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Showing 1 changed file with 4 additions and 4 deletions.
8 changes: 4 additions & 4 deletions README.md
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Expand Up @@ -81,10 +81,10 @@ The genome aligner BWA (http://bio-bwa.sourceforge.net) is downloaded and compil
-map genome-hic.map -plot genome-hic-length.png -file 0 \
genome-scaffhic.fasta GM12878-HiC_1.fastq.gz GM12878-HiC_2.fastq.gz genome-hic2.fasta \
You now have
1. Scaffolded assembly file genome-scaffhic.fasta;
2. HiC map genome-hic.map;
3. HiC length distribution image genome-hic-length.png
After the above two steps, You now have
1. Scaffolded assembly file: genome-scaffhic.fasta;
2. HiC map: genome-hic.map;
3. HiC length distribution image: genome-hic-length.png
4. Assembly file produced in the visualization step: genome-hic2.fasta
This file is not used, but it might be slightly better than genome-scaffhic.fasta
The visualization results are based on genome-scaffhic.fasta
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