Merge pull request #75 from wtsi-npg/devel

pull request from wtsi devel to master - release 0.14
wtsi-npg · Feb 10, 2015 · 35dbb10 · 35dbb10
2 parents 2210093 + d4a387f
commit 35dbb10
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 2 deletions.
diff --git a/Changes b/Changes
@@ -1,6 +1,9 @@
 CHANGES LOG
 -----------
 
+release 0.14
+ - correct prefix value given to calibration_pu -p flag (used in output file naming - it contained an unwanted ".bam")
+
 release 0.13
  - create cram index files
 

diff --git a/data/vtlib/final_output_prep.json b/data/vtlib/final_output_prep.json
@@ -153,8 +153,7 @@
 				{"subst":"outdatadir"},
 				"/",
 				{"subst":"rpt"},
-				{"subst":"phix_or_target"},
-				{"subst":"bam_ext"}
+				{"subst":"phix_or_target"}
 			],
 			"postproc":{"op":"concat", "pad":""}
 		}