Merge pull request #278 from wtsi-npg/devel

additional tweaks for release 0.28.0
wtsi-npg · Apr 9, 2020 · 925441f · 925441f
2 parents e2f6bfd + 8feaac4
commit 925441f
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diff --git a/Changes b/Changes
@@ -4,7 +4,6 @@ CHANGES LOG
 0.28.0
  - a new template for cases when marking duplicates is not required, with
    an option to clip primers, which relies on a new feature in samtools
-   and is not enabled by default
 
 0.27.0
  - check for divide by 0 when calc samtools subsample value

diff --git a/data/vtlib/markdup_none.json b/data/vtlib/markdup_none.json
@@ -14,7 +14,7 @@
 		"use_STDIN": true,
 		"use_STDOUT": true,
 		"cmd":{
-			"select":"primer_clip_method", "select_range":[1], "default":"no_clip",
+			"select":"primer_clip_method", "select_range":[1], "default":"samtools",
 			"cases":{
 				"samtools":[
 					{"subst":"samtools_executable", "required":true, "ifnull":"samtools"}, "amplicon-clip",