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release 0.18.3
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@dozy dozy released this 07 Nov 17:00
· 380 commits to master since this release
0.18.3
6e520cd

release 0.18.3

  • bwa mem flags default changes and additions
    don't use -T by default
    [new flag] use -K 100000000 (reads per thread, large value to make alignment runs replicable)
    [new flag] use -Y to soft clip supplementary alignments instead of hard clipping
  • add ability to splice and prune nodes from the final graph
  • final_output_prep changes to support optional targeted stats files.
  • use threaded bamsormadup in place of bamsort for coord sort
  • add parameters to allow selection of java or bambi (default) implementations of i2b and decode
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