Releases: wtsi-npg/p4
Releases · wtsi-npg/p4
0.33.0
extend list of preserved auxtags in realignment bamreset (for Duplex-Seq)
0.32.4
add supplementary files used in dehumanising CLIMB uploads for ENA (Heron)
add maxreadlen flag to bamstreamingduplicates in markdup_biobambam with default of 500
0.32.3
force markdup_method:none (and primer_clip_method:no_clip) for untagged phiX and non-consented human split
0.32.2
change prefix for SamHaplotag log files to include a trailing '.' (simplifies npg_irods archival)
0.32.1
Fix top-level template for human split analysis
0.32.0
add haplotag processing to stage2 analysis
move C2A analysis from bam to cram output stream (to void possible malformed MD tag values)
remove intermediate files from duplexseq processing
flatten edges arrays (burst sub-arrays) as part of vtfp processing
0.31.0
add C2A analysis to stage2 of standard pipelines
0.30.0
add optional flags to bwa mem command for Hi-C library stage 2 analyses
bam files (and md5, index files) produced using samtools and md5sum instead of bamrecompress
0.29.0
added new Botseq/Duplex-Seq/Nano-Seq markdup_method
untagged-5cb9fced4531f399573c
update Changes for release 0.29.0
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