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untagged-24670175a0a03499012f: Merge pull request #285 from wtsi-npg/devel

24 Jan 20:25
@dkj dkj
untagged-24670175a0a03499012f
1d3540f
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untagged-24670175a0a03499012f: Merge pull request #285 from wtsi-npg/devel 
prep for release 0.29.0
Assets 5
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0.28.2

17 Aug 10:42
@dozy dozy
0.28.2
ba97124
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0.28.2

alignment with markdup_method:none

  • move samtools calmd to correct position downstream of coord sort
  • make calmd -Q flag (quiet) the default (alignment with markdup_method:none)
Assets 2
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untagged-9f3034bfabacdc2bd4cd: Merge pull request #283 from wtsi-npg/devel

17 Aug 10:34
@dkj dkj
untagged-9f3034bfabacdc2bd4cd
cf31db5
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untagged-9f3034bfabacdc2bd4cd: Merge pull request #283 from wtsi-npg/devel 
release 0.28.2 prep (devel to master)
Assets 5
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untagged-2312a0a435db4d5f73a1

17 Aug 10:41
@dkj dkj
untagged-2312a0a435db4d5f73a1
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untagged-2312a0a435db4d5f73a1 
update Changes for release 0.28.2
Assets 5
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0.28.1

14 Apr 13:30
@dozy dozy
0.28.1
6ea23fd
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0.28.1
  • amend samtools command to "ampliconclip" (previously "amplicon-clip")
Assets 2
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untagged-70857c5f255a329051b7: Merge pull request #280 from wtsi-npg/devel

14 Apr 13:18
@dkj dkj
untagged-70857c5f255a329051b7
f0f36fa
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untagged-70857c5f255a329051b7: Merge pull request #280 from wtsi-npg/devel 
merge devel to master, release 0.28.1 prep
Assets 5
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0.28.0

09 Apr 16:21
@dkj dkj
0.28.0
925441f
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0.28.0 
release 0.28.0
Assets 5
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untagged-858abd23ffffc2631f69: Merge pull request #276 from wtsi-npg/devel

09 Apr 14:58
@dkj dkj
untagged-858abd23ffffc2631f69
e2f6bfd
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untagged-858abd23ffffc2631f69: Merge pull request #276 from wtsi-npg/devel 
merge from devel to master to create release 0.28.0
Assets 5
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0.27.0

10 Mar 14:42
@dozy dozy
0.27.0
78ada07
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0.27.0 Pre-release
Pre-release
  • check for divide by 0 when calc samtools subsample value
  • drop file check, explictly assume fastq.gz files are gzipped when calc #reads for salmon
  • make the code flow more robust in cases of insufficient reads for salmon
  • unconditionally remove auxtags before adapter clipping when realignment_switch is 1
Assets 2
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untagged-07a1a7f1f83758e325f3: Merge pull request #272 from wtsi-npg/devel

10 Mar 14:37
@dkj dkj
untagged-07a1a7f1f83758e325f3
78ada07
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
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untagged-07a1a7f1f83758e325f3: Merge pull request #272 from wtsi-npg/devel 
merge from devel to master to create release 0.27.0
Assets 5
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