0.15

fix construction of alternate hash command to construct sha512primesums512 seqchksum file

0.14

correct prefix value given to calibration_pu -p flag (used in output file naming - it contained an unwanted ".bam")

0.13

creation of cram indexes

0.12

viv.pl
read/write to/from stdin/stdout
exec failure of a node's command is fatal (bug fix)

vtfp.pl
updated to use new subst_params format in templates
multiple -keys/-values pairs now produce an array on substitution
when substition of nested parameters is done, array elements which are themselves arrays are
flattened (its elements are spliced into the position of the original array); net result is that
top-level parameter substitutions result in strings or arrays of strings

templates
new subst_params format for production templates
changes to final_output_prep template to add flexibility to this phase of analysis (e.g. y/xa-human split)
output of seqchksum files for hash type sha512primesums512 added

0.11

add node to post process md5sum output for cram files, removing trailing " -\n". Otherwise the iRODS loader fails.

0.10

change to using teepot instead of tee or mbuffer
change back to bamstreamingmarkduplicates (from bammarkduplicates2)
addition of samtools stats (both -F 0x900 and -F 0XB00) - bamcheck also still used, though now with -F 0x900
md5 for cram files
bamseqchksum outputs saved to disk

0.09

revert to bammarkduplicates2 while issues with bamstreamingmarkduplicates are investigated
do not remove lib as part of installation

Release 0.08

additions to production tophat2 and bwa_mem templates - fixmate, adddupmarksupport, calibration_pu, use of bamstreamingmarkduplicates

new vtlib templates - new versions of existing production templates, refactored into subgraphs

improved graph viewer "edit" now in visualisation

Release 0.07

Fix to ensure GRCh38 processing does not deadlock.

Release 0.06

corrected cut+paste error in find command to search for blib/lib inst…