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V5.389/V5.397 update
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Ezra Peisach committed Mar 20, 2024
1 parent be81080 commit 9407990
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Showing 8 changed files with 359,907 additions and 11 deletions.
173,233 changes: 173,233 additions & 0 deletions archive/mmcif_pdbx_v50-v5.389.dic
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186,533 changes: 186,533 additions & 0 deletions archive/mmcif_pdbx_v5_next-v5.397.dic
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8 changes: 7 additions & 1 deletion base/mmcif_pdbx_v50-header.dic
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Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ data_mmcif_pdbx.dic

_dictionary.title mmcif_pdbx.dic
_dictionary.datablock_id mmcif_pdbx.dic
_dictionary.version 5.388
_dictionary.version 5.389
#
loop_
_dictionary_history.version
Expand Down Expand Up @@ -2889,3 +2889,9 @@ Changes (ep/mgb):
+ Add PDB-Dev to _database_2.database_id
+ Update funding enumerations
;
5.389 2024-03-20
;
Changes (ep):
+ Add Robetta, PHYRE and InsightII to _pdbx_initial_refinement_model.source_name enumeration
+ Update funding enumerations
;
8 changes: 7 additions & 1 deletion base/mmcif_pdbx_v5_next-header.dic
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Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ data_mmcif_pdbx.dic

_dictionary.title mmcif_pdbx.dic
_dictionary.datablock_id mmcif_pdbx.dic
_dictionary.version 5.396
_dictionary.version 5.397
#
loop_
_dictionary_history.version
Expand Down Expand Up @@ -3027,3 +3027,9 @@ Changes (ep/mgb):
+ Add PDB-Dev to _database_2.database_id
+ Update funding enumerations
;
5.397 2024-03-20
;
Changes (ep):
+ Add Robetta, PHYRE and InsightII to _pdbx_initial_refinement_model.source_name enumeration
+ Update funding enumerations
;
49 changes: 46 additions & 3 deletions dist/mmcif_pdbx_v50.dic
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Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ _datablock.description
#
_dictionary.title mmcif_pdbx.dic
_dictionary.datablock_id mmcif_pdbx.dic
_dictionary.version 5.388
_dictionary.version 5.389
#
loop_
_dictionary_history.version
Expand Down Expand Up @@ -3145,6 +3145,13 @@ Changes (ep/mgb):
+ Update funding enumerations
;

5.389 2024-03-20
;
Changes (ep):
+ Add Robetta, PHYRE and InsightII to _pdbx_initial_refinement_model.source_name enumeration
+ Update funding enumerations
;

#
loop_
_sub_category.id
Expand Down Expand Up @@ -3693,10 +3700,10 @@ _pdbx_dictionary_component.title
_pdbx_dictionary_component.version
mmcif_pdbx-base.dic mmcif_pdbx-base.dic "mmCIF/PDBx base dictionary" 0.26
mmcif_xfel_extensions-v3.dic mmcif_xfel_extensions-v3.dic "PDBx/mmCIF XFELDictionary License Extension" 0.0.1
mmcif_pdbx_audit_support-extension.dic mmcif_pdbx_audit_support-extension.dic "mmCIF/PDBx Audit support extension" 0.22
mmcif_pdbx_audit_support-extension.dic mmcif_pdbx_audit_support-extension.dic "mmCIF/PDBx Audit support extension" 0.23
mmcif_pdbx_sifts.dic mmcif_pdbx_sifts.dic "PDBx/mmCIF Dictionary Sifts Extension" 0.0.2
mmcif_pdbx_license.dic mmcif_pdbx_license.dic "PDBx/mmCIF Dictionary License Extension" 0.0.1
initial-model-extension.dic initial-model-extension.dic "PDBx/mmCIF Initial model extension" 0.9
initial-model-extension.dic initial-model-extension.dic "PDBx/mmCIF Initial model extension" 0.10
ptm-extension.dic ptm-extension.dic "PDBx/mmCIF PTM extension" 0.3
#
loop_
Expand Down Expand Up @@ -4086,6 +4093,14 @@ Changes (EP):
+ Add 'IdEx Universite Paris Cite' and 'Fraunhofer Cluster of Excellence Immune-Mediated Diseases'
;

mmcif_pdbx_audit_support-extension.dic 0.23 2024-03-20
;
Changes (EP):
+ Add 'Dorothea Schloezer Program from the Georg-August University of Goettingen',
'Erik, Karin and Gosta Selander Foundation', 'The Swedish Society of Medicine',
'Life Sciences Research Foundation'
;

mmcif_pdbx_sifts.dic 0.0.1 2021-08-01
;
Changes (EP/PC):
Expand Down Expand Up @@ -4166,6 +4181,12 @@ Changes (EP):
Update description for pdbx_initial_refinement_model.entity_id_list.
;

initial-model-extension.dic 0.10 2024-03-20
;
Changes (EP):
+ Add Robetta, PHYRE and InsightII to _pdbx_initial_refinement_model.source_name enumeration
;

ptm-extension.dic 0.1 2023-05-26
;
Changes (mgb)
Expand Down Expand Up @@ -161782,6 +161803,7 @@ save__pdbx_audit_support.funding_organization
"_pdbx_audit_support.funding_organization" "Department of Veterans Affairs (VA, United States)" "United States"
"_pdbx_audit_support.funding_organization" "Diamond Light Source" "United Kingdom"
"_pdbx_audit_support.funding_organization" "DOC Fellowship of the Austrian Academy of Sciences" Austria
"_pdbx_audit_support.funding_organization" "Dorothea Schloezer Program from the Georg-August University of Goettingen" Germany
"_pdbx_audit_support.funding_organization" "Dutch Kidney Foundation" Netherlands
"_pdbx_audit_support.funding_organization" "Ecole polytechnique" France
"_pdbx_audit_support.funding_organization" "EIPOD fellowship under Marie Sklodowska-Curie Actions COFUND" Germany
Expand All @@ -161791,6 +161813,7 @@ save__pdbx_audit_support.funding_organization
"_pdbx_audit_support.funding_organization" "Emerson Collective" "United States"
"_pdbx_audit_support.funding_organization" "Engineering and Physical Sciences Research Council" "United Kingdom"
"_pdbx_audit_support.funding_organization" "Enterprise Ireland" Ireland
"_pdbx_audit_support.funding_organization" "Erik, Karin and Gosta Selander Foundation" Sweden
"_pdbx_audit_support.funding_organization" "ETH Zurich" Switzerland
"_pdbx_audit_support.funding_organization" "Estonian Research Council" Estonia
"_pdbx_audit_support.funding_organization" "European Commission" "European Union"
Expand Down Expand Up @@ -161917,6 +161940,7 @@ save__pdbx_audit_support.funding_organization
"_pdbx_audit_support.funding_organization" "Leibniz Association" Germany
"_pdbx_audit_support.funding_organization" "Leukemia & Lymphoma Society" "United States"
"_pdbx_audit_support.funding_organization" "Leverhulme Trust" "United Kingdom"
"_pdbx_audit_support.funding_organization" "Life Sciences Research Foundation" "United States"
"_pdbx_audit_support.funding_organization" LOreal-UNESCO France
"_pdbx_audit_support.funding_organization" "Louis-Jeantet Foundation" Switzerland
"_pdbx_audit_support.funding_organization" "LOEWE Center DRUID" Germany
Expand Down Expand Up @@ -162107,6 +162131,7 @@ save__pdbx_audit_support.funding_organization
"_pdbx_audit_support.funding_organization" "The Robertson Foundation" "United States"
"_pdbx_audit_support.funding_organization" "The Structural Genomics Consortium (SGC)" Canada
"_pdbx_audit_support.funding_organization" "The Swedish Foundation for Strategic Research" Sweden
"_pdbx_audit_support.funding_organization" "The Swedish Society of Medicine" Sweden
"_pdbx_audit_support.funding_organization" "The Thailand Research Fund (TRF)" Thailand
"_pdbx_audit_support.funding_organization" "The Vallee Foundation Inc." "United States"
"_pdbx_audit_support.funding_organization" "The Walter and Eliza Hall Institute of Medical Research" Australia
Expand Down Expand Up @@ -166668,14 +166693,32 @@ save__pdbx_initial_refinement_model.source_name
_item_enumeration.value
PDB
AlphaFold
Robetta
RoseTTAFold
ModelArchive
SwissModel
Modeller
ITasser
PDB-Dev
PHYRE
InsightII
Other
#
loop_
_pdbx_item_enumeration.name
_pdbx_item_enumeration.value
_pdbx_item_enumeration.detail
"_pdbx_initial_refinement_model.source_name" PDB .
"_pdbx_initial_refinement_model.source_name" AlphaFold .
"_pdbx_initial_refinement_model.source_name" Robetta .
"_pdbx_initial_refinement_model.source_name" RoseTTAFold .
"_pdbx_initial_refinement_model.source_name" ModelArchive .
"_pdbx_initial_refinement_model.source_name" SwissModel .
"_pdbx_initial_refinement_model.source_name" Modeller .
"_pdbx_initial_refinement_model.source_name" ITasser .
"_pdbx_initial_refinement_model.source_name" PDB-Dev .
"_pdbx_initial_refinement_model.source_name" Other .
#
save_
#
save__pdbx_initial_refinement_model.accession_code
Expand Down
49 changes: 46 additions & 3 deletions dist/mmcif_pdbx_v5_next.dic
View file
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@ _datablock.description
#
_dictionary.title mmcif_pdbx.dic
_dictionary.datablock_id mmcif_pdbx.dic
_dictionary.version 5.396
_dictionary.version 5.397
#
loop_
_dictionary_history.version
Expand Down Expand Up @@ -3289,6 +3289,13 @@ Changes (ep/mgb):
+ Update funding enumerations
;

5.397 2024-03-20
;
Changes (ep):
+ Add Robetta, PHYRE and InsightII to _pdbx_initial_refinement_model.source_name enumeration
+ Update funding enumerations
;

#
loop_
_sub_category.id
Expand Down Expand Up @@ -3837,10 +3844,10 @@ _pdbx_dictionary_component.title
_pdbx_dictionary_component.version
mmcif_pdbx-base.dic mmcif_pdbx-base.dic "mmCIF/PDBx base dictionary" 0.26
mmcif_xfel_extensions-v3.dic mmcif_xfel_extensions-v3.dic "PDBx/mmCIF XFELDictionary License Extension" 0.0.1
mmcif_pdbx_audit_support-extension.dic mmcif_pdbx_audit_support-extension.dic "mmCIF/PDBx Audit support extension" 0.22
mmcif_pdbx_audit_support-extension.dic mmcif_pdbx_audit_support-extension.dic "mmCIF/PDBx Audit support extension" 0.23
mmcif_pdbx_sifts.dic mmcif_pdbx_sifts.dic "PDBx/mmCIF Dictionary Sifts Extension" 0.0.2
mmcif_pdbx_license.dic mmcif_pdbx_license.dic "PDBx/mmCIF Dictionary License Extension" 0.0.1
initial-model-extension.dic initial-model-extension.dic "PDBx/mmCIF Initial model extension" 0.9
initial-model-extension.dic initial-model-extension.dic "PDBx/mmCIF Initial model extension" 0.10
ptm-extension.dic ptm-extension.dic "PDBx/mmCIF PTM extension" 0.3
#
loop_
Expand Down Expand Up @@ -4230,6 +4237,14 @@ Changes (EP):
+ Add 'IdEx Universite Paris Cite' and 'Fraunhofer Cluster of Excellence Immune-Mediated Diseases'
;

mmcif_pdbx_audit_support-extension.dic 0.23 2024-03-20
;
Changes (EP):
+ Add 'Dorothea Schloezer Program from the Georg-August University of Goettingen',
'Erik, Karin and Gosta Selander Foundation', 'The Swedish Society of Medicine',
'Life Sciences Research Foundation'
;

mmcif_pdbx_sifts.dic 0.0.1 2021-08-01
;
Changes (EP/PC):
Expand Down Expand Up @@ -4310,6 +4325,12 @@ Changes (EP):
Update description for pdbx_initial_refinement_model.entity_id_list.
;

initial-model-extension.dic 0.10 2024-03-20
;
Changes (EP):
+ Add Robetta, PHYRE and InsightII to _pdbx_initial_refinement_model.source_name enumeration
;

ptm-extension.dic 0.1 2023-05-26
;
Changes (mgb)
Expand Down Expand Up @@ -162116,6 +162137,7 @@ save__pdbx_audit_support.funding_organization
"_pdbx_audit_support.funding_organization" "Department of Veterans Affairs (VA, United States)" "United States"
"_pdbx_audit_support.funding_organization" "Diamond Light Source" "United Kingdom"
"_pdbx_audit_support.funding_organization" "DOC Fellowship of the Austrian Academy of Sciences" Austria
"_pdbx_audit_support.funding_organization" "Dorothea Schloezer Program from the Georg-August University of Goettingen" Germany
"_pdbx_audit_support.funding_organization" "Dutch Kidney Foundation" Netherlands
"_pdbx_audit_support.funding_organization" "Ecole polytechnique" France
"_pdbx_audit_support.funding_organization" "EIPOD fellowship under Marie Sklodowska-Curie Actions COFUND" Germany
Expand All @@ -162125,6 +162147,7 @@ save__pdbx_audit_support.funding_organization
"_pdbx_audit_support.funding_organization" "Emerson Collective" "United States"
"_pdbx_audit_support.funding_organization" "Engineering and Physical Sciences Research Council" "United Kingdom"
"_pdbx_audit_support.funding_organization" "Enterprise Ireland" Ireland
"_pdbx_audit_support.funding_organization" "Erik, Karin and Gosta Selander Foundation" Sweden
"_pdbx_audit_support.funding_organization" "ETH Zurich" Switzerland
"_pdbx_audit_support.funding_organization" "Estonian Research Council" Estonia
"_pdbx_audit_support.funding_organization" "European Commission" "European Union"
Expand Down Expand Up @@ -162251,6 +162274,7 @@ save__pdbx_audit_support.funding_organization
"_pdbx_audit_support.funding_organization" "Leibniz Association" Germany
"_pdbx_audit_support.funding_organization" "Leukemia & Lymphoma Society" "United States"
"_pdbx_audit_support.funding_organization" "Leverhulme Trust" "United Kingdom"
"_pdbx_audit_support.funding_organization" "Life Sciences Research Foundation" "United States"
"_pdbx_audit_support.funding_organization" LOreal-UNESCO France
"_pdbx_audit_support.funding_organization" "Louis-Jeantet Foundation" Switzerland
"_pdbx_audit_support.funding_organization" "LOEWE Center DRUID" Germany
Expand Down Expand Up @@ -162441,6 +162465,7 @@ save__pdbx_audit_support.funding_organization
"_pdbx_audit_support.funding_organization" "The Robertson Foundation" "United States"
"_pdbx_audit_support.funding_organization" "The Structural Genomics Consortium (SGC)" Canada
"_pdbx_audit_support.funding_organization" "The Swedish Foundation for Strategic Research" Sweden
"_pdbx_audit_support.funding_organization" "The Swedish Society of Medicine" Sweden
"_pdbx_audit_support.funding_organization" "The Thailand Research Fund (TRF)" Thailand
"_pdbx_audit_support.funding_organization" "The Vallee Foundation Inc." "United States"
"_pdbx_audit_support.funding_organization" "The Walter and Eliza Hall Institute of Medical Research" Australia
Expand Down Expand Up @@ -166910,14 +166935,32 @@ save__pdbx_initial_refinement_model.source_name
_item_enumeration.value
PDB
AlphaFold
Robetta
RoseTTAFold
ModelArchive
SwissModel
Modeller
ITasser
PDB-Dev
PHYRE
InsightII
Other
#
loop_
_pdbx_item_enumeration.name
_pdbx_item_enumeration.value
_pdbx_item_enumeration.detail
"_pdbx_initial_refinement_model.source_name" PDB .
"_pdbx_initial_refinement_model.source_name" AlphaFold .
"_pdbx_initial_refinement_model.source_name" Robetta .
"_pdbx_initial_refinement_model.source_name" RoseTTAFold .
"_pdbx_initial_refinement_model.source_name" ModelArchive .
"_pdbx_initial_refinement_model.source_name" SwissModel .
"_pdbx_initial_refinement_model.source_name" Modeller .
"_pdbx_initial_refinement_model.source_name" ITasser .
"_pdbx_initial_refinement_model.source_name" PDB-Dev .
"_pdbx_initial_refinement_model.source_name" Other .
#
save_
#
save__pdbx_initial_refinement_model.accession_code
Expand Down
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