diff --git a/archive/mmcif_pdbx_v50-v5.386.dic b/archive/mmcif_pdbx_v50-v5.386.dic index ac5d2fa..280b2fe 100644 --- a/archive/mmcif_pdbx_v50-v5.386.dic +++ b/archive/mmcif_pdbx_v50-v5.386.dic @@ -3121,9 +3121,6 @@ Changes (ep): Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; # @@ -3874,9 +3871,6 @@ mmcif_pdbx-base.dic 0.24 2023-01-30 Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; mmcif_xfel_extensions-v3.dic 0.0.1 2023-05-31 @@ -116359,49 +116353,6 @@ save__em_entity_assembly.chimera # save_ # -save__em_entity_assembly.oligomeric_state - _item_description.description " A description of the oligomeric state of the assembly" - # - _item.name "_em_entity_assembly.oligomeric_state" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code line - # - _pdbx_item_context.item_name "_em_entity_assembly.oligomeric_state" - # -save_ -# -save__em_entity_assembly.recombinant_exp_flag - _item_description.description " A flag to indicate if there is an expressed component" - # - _item.name "_em_entity_assembly.recombinant_exp_flag" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code code - # - _pdbx_item_context.item_name "_em_entity_assembly.recombinant_exp_flag" - # -save_ -# -save__em_entity_assembly.number_unique_components - _item_description.description " Number of unique components in the sample" - # - _item.name "_em_entity_assembly.number_unique_components" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code int - # - _item_range.maximum . - _item_range.minimum 0 - # - _pdbx_item_context.type WWPDB_LOCAL,EMDB_PUBLIC - _pdbx_item_context.item_name "_em_entity_assembly.number_of_copies" - # -save_ -# save_em_virus_entity _category.description ; Data items in the EM_VIRUS_ENTITY category record details @@ -121347,17 +121298,6 @@ save__em_entity_assembly_naturalsource.details # save_ # -save__em_entity_assembly_naturalsource.synonym_organism - _item_description.description " A scientific name synonym of the source organism for the component" - # - _item.name "_em_entity_assembly_naturalsource.synonym_organism" - _item.category_id em_entity_assembly_naturalsource - _item.mandatory_code no - # - _item_type.code line - # -save_ -# save_em_entity_assembly_synthetic _category.description ; Data items in this category record taxonomic details about the synthetic source for EM @@ -124548,17 +124488,6 @@ save__em_image_recording.num_real_images # save_ # -save__em_image_recording.bits_per_pixel - _item_description.description " The number of bits in a pixel of the images being collected. Bits per pixel value of the detector used for recording images." - # - _item.name "_em_image_recording.bits_per_pixel" - _item.category_id em_image_recording - _item.mandatory_code no - # - _item_type.code int - # -save_ -# save_em_imaging_optics _category.description " Description of a few specialist optics apparatus" _category.id em_imaging_optics diff --git a/archive/mmcif_pdbx_v5_next-v5.394.dic b/archive/mmcif_pdbx_v5_next-v5.394.dic index b3857f0..2a4e530 100644 --- a/archive/mmcif_pdbx_v5_next-v5.394.dic +++ b/archive/mmcif_pdbx_v5_next-v5.394.dic @@ -3265,9 +3265,6 @@ Changes (ep): Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; # @@ -4018,9 +4015,6 @@ mmcif_pdbx-base.dic 0.24 2023-01-30 Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; mmcif_xfel_extensions-v3.dic 0.0.1 2023-05-31 @@ -116609,49 +116603,6 @@ save__em_entity_assembly.chimera # save_ # -save__em_entity_assembly.oligomeric_state - _item_description.description " A description of the oligomeric state of the assembly" - # - _item.name "_em_entity_assembly.oligomeric_state" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code line - # - _pdbx_item_context.item_name "_em_entity_assembly.oligomeric_state" - # -save_ -# -save__em_entity_assembly.recombinant_exp_flag - _item_description.description " A flag to indicate if there is an expressed component" - # - _item.name "_em_entity_assembly.recombinant_exp_flag" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code code - # - _pdbx_item_context.item_name "_em_entity_assembly.recombinant_exp_flag" - # -save_ -# -save__em_entity_assembly.number_unique_components - _item_description.description " Number of unique components in the sample" - # - _item.name "_em_entity_assembly.number_unique_components" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code int - # - _item_range.maximum . - _item_range.minimum 0 - # - _pdbx_item_context.type WWPDB_LOCAL,EMDB_PUBLIC - _pdbx_item_context.item_name "_em_entity_assembly.number_of_copies" - # -save_ -# save_em_virus_entity _category.description ; Data items in the EM_VIRUS_ENTITY category record details @@ -121597,17 +121548,6 @@ save__em_entity_assembly_naturalsource.details # save_ # -save__em_entity_assembly_naturalsource.synonym_organism - _item_description.description " A scientific name synonym of the source organism for the component" - # - _item.name "_em_entity_assembly_naturalsource.synonym_organism" - _item.category_id em_entity_assembly_naturalsource - _item.mandatory_code no - # - _item_type.code line - # -save_ -# save_em_entity_assembly_synthetic _category.description ; Data items in this category record taxonomic details about the synthetic source for EM @@ -124798,17 +124738,6 @@ save__em_image_recording.num_real_images # save_ # -save__em_image_recording.bits_per_pixel - _item_description.description " The number of bits in a pixel of the images being collected. Bits per pixel value of the detector used for recording images." - # - _item.name "_em_image_recording.bits_per_pixel" - _item.category_id em_image_recording - _item.mandatory_code no - # - _item_type.code int - # -save_ -# save_em_imaging_optics _category.description " Description of a few specialist optics apparatus" _category.id em_imaging_optics diff --git a/base/mmcif_pdbx-base.dic b/base/mmcif_pdbx-base.dic index 1ba721c..69523e7 100644 --- a/base/mmcif_pdbx-base.dic +++ b/base/mmcif_pdbx-base.dic @@ -191,9 +191,6 @@ mmcif_pdbx-base.dic 0.24 2023-01-30 Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; ############### ## ATOM_SITE ## @@ -95540,49 +95537,6 @@ save__em_entity_assembly.chimera _pdbx_item_context.item_name '_em_entity_assembly.chimera' save_ -save__em_entity_assembly.oligomeric_state - _item_description.description -; A description of the oligomeric state of the assembly -; - _item.name '_em_entity_assembly.oligomeric_state' - _item.category_id em_entity_assembly - _item.mandatory_code no - _item_type.code line - loop_ - _pdbx_item_context.type WWPDB_LOCAL,EMDB_PUBLIC - _pdbx_item_context.item_name '_em_entity_assembly.oligomeric_state' - save_ - -save__em_entity_assembly.recombinant_exp_flag - _item_description.description -; A flag to indicate if there is an expressed component -; - _item.name '_em_entity_assembly.recombinant_exp_flag' - _item.category_id em_entity_assembly - _item.mandatory_code no - _item_type.code code - loop_ - _pdbx_item_context.type WWPDB_LOCAL,EMDB_PUBLIC - _pdbx_item_context.item_name '_em_entity_assembly.recombinant_exp_flag' - save_ - -save__em_entity_assembly.number_unique_components - _item_description.description -; Number of unique components in the sample -; - _item.name '_em_entity_assembly.number_unique_components' - _item.category_id em_entity_assembly - _item.mandatory_code no - _item_type.code int - - loop_ - _item_range.maximum - _item_range.minimum . 0 - - _pdbx_item_context.type WWPDB_LOCAL,EMDB_PUBLIC #V5 - _pdbx_item_context.item_name '_em_entity_assembly.number_of_copies' #V5 - - save_ ##################### ## EM_VIRUS_ENTITY ## @@ -100212,15 +100166,6 @@ save__em_entity_assembly_naturalsource.details _item_type.code text save_ -save__em_entity_assembly_naturalsource.synonym_organism - _item_description.description -; A scientific name synonym of the source organism for the component -; - _item.name '_em_entity_assembly_naturalsource.synonym_organism' - _item.category_id em_entity_assembly_naturalsource - _item.mandatory_code no - _item_type.code line - save_ ################################## ## EM_ENTITY_ASSEMBLY_SYNTHETIC ## @@ -103044,16 +102989,6 @@ save__em_image_recording.num_real_images _item_type.code positive_int save_ -save__em_image_recording.bits_per_pixel - _item_description.description -; The number of bits in a pixel of the images being collected. Bits per pixel value of the detector used for recording images. -; - _item.name '_em_image_recording.bits_per_pixel' - _item.category_id em_image_recording - _item.mandatory_code no - _item_type.code int - - save_ ####################### ## EM_IMAGING_OPTICS ## diff --git a/base/mmcif_pdbx_v50-header.dic b/base/mmcif_pdbx_v50-header.dic index fac8260..437d049 100644 --- a/base/mmcif_pdbx_v50-header.dic +++ b/base/mmcif_pdbx_v50-header.dic @@ -2868,7 +2868,4 @@ Changes (ep): Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; \ No newline at end of file diff --git a/base/mmcif_pdbx_v5_next-header.dic b/base/mmcif_pdbx_v5_next-header.dic index e72bb30..ff9db96 100644 --- a/base/mmcif_pdbx_v5_next-header.dic +++ b/base/mmcif_pdbx_v5_next-header.dic @@ -3006,7 +3006,4 @@ Changes (ep): Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; \ No newline at end of file diff --git a/dist/mmcif_pdbx_v50.dic b/dist/mmcif_pdbx_v50.dic index ac5d2fa..280b2fe 100644 --- a/dist/mmcif_pdbx_v50.dic +++ b/dist/mmcif_pdbx_v50.dic @@ -3121,9 +3121,6 @@ Changes (ep): Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; # @@ -3874,9 +3871,6 @@ mmcif_pdbx-base.dic 0.24 2023-01-30 Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; mmcif_xfel_extensions-v3.dic 0.0.1 2023-05-31 @@ -116359,49 +116353,6 @@ save__em_entity_assembly.chimera # save_ # -save__em_entity_assembly.oligomeric_state - _item_description.description " A description of the oligomeric state of the assembly" - # - _item.name "_em_entity_assembly.oligomeric_state" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code line - # - _pdbx_item_context.item_name "_em_entity_assembly.oligomeric_state" - # -save_ -# -save__em_entity_assembly.recombinant_exp_flag - _item_description.description " A flag to indicate if there is an expressed component" - # - _item.name "_em_entity_assembly.recombinant_exp_flag" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code code - # - _pdbx_item_context.item_name "_em_entity_assembly.recombinant_exp_flag" - # -save_ -# -save__em_entity_assembly.number_unique_components - _item_description.description " Number of unique components in the sample" - # - _item.name "_em_entity_assembly.number_unique_components" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code int - # - _item_range.maximum . - _item_range.minimum 0 - # - _pdbx_item_context.type WWPDB_LOCAL,EMDB_PUBLIC - _pdbx_item_context.item_name "_em_entity_assembly.number_of_copies" - # -save_ -# save_em_virus_entity _category.description ; Data items in the EM_VIRUS_ENTITY category record details @@ -121347,17 +121298,6 @@ save__em_entity_assembly_naturalsource.details # save_ # -save__em_entity_assembly_naturalsource.synonym_organism - _item_description.description " A scientific name synonym of the source organism for the component" - # - _item.name "_em_entity_assembly_naturalsource.synonym_organism" - _item.category_id em_entity_assembly_naturalsource - _item.mandatory_code no - # - _item_type.code line - # -save_ -# save_em_entity_assembly_synthetic _category.description ; Data items in this category record taxonomic details about the synthetic source for EM @@ -124548,17 +124488,6 @@ save__em_image_recording.num_real_images # save_ # -save__em_image_recording.bits_per_pixel - _item_description.description " The number of bits in a pixel of the images being collected. Bits per pixel value of the detector used for recording images." - # - _item.name "_em_image_recording.bits_per_pixel" - _item.category_id em_image_recording - _item.mandatory_code no - # - _item_type.code int - # -save_ -# save_em_imaging_optics _category.description " Description of a few specialist optics apparatus" _category.id em_imaging_optics diff --git a/dist/mmcif_pdbx_v5_next.dic b/dist/mmcif_pdbx_v5_next.dic index b3857f0..2a4e530 100644 --- a/dist/mmcif_pdbx_v5_next.dic +++ b/dist/mmcif_pdbx_v5_next.dic @@ -3265,9 +3265,6 @@ Changes (ep): Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; # @@ -4018,9 +4015,6 @@ mmcif_pdbx-base.dic 0.24 2023-01-30 Changes (ep): + Add enumeration for _pdbx_database_related.db_name + Add "NMRtist" to pdbx_nmr_software.name enumeration - + Add _em_entity_assembly.oligomeric_state, _em_entity_assembly.recombinant_exp_flag, - _em_entity_assembly.number_unique_components and _em_image_recording.bits_per_pixel - to legacy EM structures. ; mmcif_xfel_extensions-v3.dic 0.0.1 2023-05-31 @@ -116609,49 +116603,6 @@ save__em_entity_assembly.chimera # save_ # -save__em_entity_assembly.oligomeric_state - _item_description.description " A description of the oligomeric state of the assembly" - # - _item.name "_em_entity_assembly.oligomeric_state" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code line - # - _pdbx_item_context.item_name "_em_entity_assembly.oligomeric_state" - # -save_ -# -save__em_entity_assembly.recombinant_exp_flag - _item_description.description " A flag to indicate if there is an expressed component" - # - _item.name "_em_entity_assembly.recombinant_exp_flag" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code code - # - _pdbx_item_context.item_name "_em_entity_assembly.recombinant_exp_flag" - # -save_ -# -save__em_entity_assembly.number_unique_components - _item_description.description " Number of unique components in the sample" - # - _item.name "_em_entity_assembly.number_unique_components" - _item.category_id em_entity_assembly - _item.mandatory_code no - # - _item_type.code int - # - _item_range.maximum . - _item_range.minimum 0 - # - _pdbx_item_context.type WWPDB_LOCAL,EMDB_PUBLIC - _pdbx_item_context.item_name "_em_entity_assembly.number_of_copies" - # -save_ -# save_em_virus_entity _category.description ; Data items in the EM_VIRUS_ENTITY category record details @@ -121597,17 +121548,6 @@ save__em_entity_assembly_naturalsource.details # save_ # -save__em_entity_assembly_naturalsource.synonym_organism - _item_description.description " A scientific name synonym of the source organism for the component" - # - _item.name "_em_entity_assembly_naturalsource.synonym_organism" - _item.category_id em_entity_assembly_naturalsource - _item.mandatory_code no - # - _item_type.code line - # -save_ -# save_em_entity_assembly_synthetic _category.description ; Data items in this category record taxonomic details about the synthetic source for EM @@ -124798,17 +124738,6 @@ save__em_image_recording.num_real_images # save_ # -save__em_image_recording.bits_per_pixel - _item_description.description " The number of bits in a pixel of the images being collected. Bits per pixel value of the detector used for recording images." - # - _item.name "_em_image_recording.bits_per_pixel" - _item.category_id em_image_recording - _item.mandatory_code no - # - _item_type.code int - # -save_ -# save_em_imaging_optics _category.description " Description of a few specialist optics apparatus" _category.id em_imaging_optics