bntools

Tools for BioNano data analysis

How to install

Download source from github:

git clone http://github.com/yanlinlin82/bntools

or

wget -N https://github.com/yanlinlin82/bntools/archive/master.zip
unzip master.zip && mv bntools-master/ bntools/

Then build it:

cd bntools/ && make

Nick reference genome sequences (in FASTA format) to generate nick site map (in Tab-Separated-Values format).
```
 bntools nick hg38.fa -o hg38.tsv.gz
```
Map molecules onto the reference map.
```
 bntools map hg38.tsv.gz input.bnx.gz
```
Convert maps between formats (txt/tsv/bnx/cmap).
```
 bntools view input.bnx.gz -f cmap
```

Gzip compression input/output files are supported. If you specify an output filename with ".gz" suffix, bntools will save it with gzip compression.
To build with debug info, try:
```
 make DEBUG=1
```