README.md

Instructions

Deps

• python 3 with numpy, scipy, matplotlib, pandas and cffi modules installed
• Jupyter
• SFML

Lennard-Jones gas simulation

• Compile the simulation core and the CFFI module with make brownian-motion-pysimul (with SFML) or make brownian-motion-pysimul-headless (without display)
• Run simulation with the Jupyter notebook main.ipynb

Langevin simulations for computing survival probabilities and MFPT

• Compile the simulation core and the CFFI module with make langevin-survival-pysimul after adjusting the various flags in langevin-survival.cpp
• For computing the survival probabilities, run the simulation with one of the Jupyter notebook in langevin-survival/
• For computing the MFPT, run the simulation with langevin-mfpt/langevin-ft-automated.ipynb