From b65d0466b4196a09e53faf96af7db160ff6420af Mon Sep 17 00:00:00 2001 From: 36000 Date: Fri, 8 Sep 2023 09:52:32 -0700 Subject: [PATCH] 1.1 release --- CHANGES.rst | 36 ++++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/CHANGES.rst b/CHANGES.rst index e8805a820..f413f55d4 100644 --- a/CHANGES.rst +++ b/CHANGES.rst @@ -1,3 +1,39 @@ +1.1 (September 08, 2023) +======================== +Add compatibility with GPU based tractography. Speeds +up the Mahalanobis cleaning step. Removes interface for +loading ITK files and using them as maps in pyAFQ, because +it did not work in all cases. Adds more examples and updates +docs to a new system. Other minor fixes. + * [FIX] delete folders in AFQ derivatives when clobbering (#1015) + * Update the pypi action so that it runs on latest ubuntu. (#1012) + * NF: Adds fetcher for cerebellar peduncle waypoint ROIs. (#968) + * [ENH] Bundle montage (#994) + * Slf123new (#997) + * (#1011) + * [FIX] fix a small bug in the curvature code (#985) + * added more documentation of dependencies (#1002) + * [Doc] add an example of single subject rois; reduce example time (#999) + * RF: Set dask as the default paralellization engine. (#1009) + * [ENH] add OR pediatric bundle definition, make it easier to add future pediatric bundles (#1007) + * DOC: Myst (#992) + * [ENH] Much faster mahal cleaning (#982) + * [FIX] Remove itk (#981) + * Update setup.cfg with newer pybids (#991) + * Update plot_viz.py (#993) + * Installation with quotes (#988) + * [ENH] update dipy (#986) + * [ENH] Adds export_up_to, adds some minor fixes here and there (#977) + * [ENH] allow the setting of number of voxels for a seed mask (#976) + * [ENH] Calculate new curvature metric manually (#973) + * [FIX] split GPU pyafq docker builds into differnet actions (#975) + * [ENH] add CUDA 12 compat to GPU tractography (#972) + * [ENH] allow GPU docker file to play nice with singularity (#971) + * [ENH/FIX] Improvements for finding the Visual Pathway (#953) + * Adds back reference documentation to reference section. (#964) + * Starting doc overhaul (#948) + * [ENH] add gpu tracking to pyAFQ (#962) + 1.0.1 (February 22, 2023) ========================= Fixed two bugs, where max streamline length was not being enforced and the