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installation fails #1

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fabian-s opened this issue Mar 2, 2020 · 0 comments
Open

installation fails #1

fabian-s opened this issue Mar 2, 2020 · 0 comments

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@fabian-s
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fabian-s commented Mar 2, 2020

Hi Yousra, sorry to bother you again --

I had to work on a different project and just got back to this today. Unfortunately, I can't install the package on my machine.
Could you share your system settings with me and/or take a look how the output below differs from what you're getting (besides the obvious error message....)?

Specifically:
Are you also getting this many compiler warnings?
Which versions of R / Rcpp / RcppEigen did you test this on?
What does the call to g++ that yields a loadable installation look like for you?

I'm running

> sessioninfo::session_info(c("BH", "RcppEigen"))
─ Session info ──────────────────────────────────────────────────────────────────────────────────────
 setting  value                       
 version  R version 3.6.2 (2019-12-12)
 os       Linux Mint 19.1             
 system   x86_64, linux-gnu           
 ui       RStudio                     
 language en_GB                       
 collate  en_GB.UTF-8                 
 ctype    en_GB.UTF-8                 
 tz       Europe/Berlin               
 date     2020-03-02Packages ──────────────────────────────────────────────────────────────────────────────────────────
 package   * version   date       lib source        
 BH          1.72.0-3  2020-01-08 [1] CRAN (R 3.6.2)
 lattice     0.20-40   2020-02-19 [4] CRAN (R 3.6.2)
 Matrix      1.2-18    2019-11-27 [4] CRAN (R 3.6.1)
 Rcpp        1.0.3     2019-11-08 [1] CRAN (R 3.6.2)
 RcppEigen   0.3.3.7.0 2019-11-16 [1] CRAN (R 3.6.2)

This is what the installation yields:

==> Rcpp::compileAttributes()

* Updated src/RcppExports.cpp
* Updated R/RcppExports.R

==> R CMD INSTALL --no-multiarch --with-keep.source multgam

g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -fopenmp -std=c++11 -O3 -ftree-vectorize -Wall -march=native -mavx -mfma -I../inst/include/ -I"/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include" -I"/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/BH/include"  -std=c++11 -O3 -ftree-vectorize -march=native -mfma -mavx  -fopenmp -fpic  -g -O2 -Wall -pedantic -fstack-protector-strong -D_FORTIFY_SOURCE=2  -c RcppExports.cpp -o RcppExports.o
* installing to library/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6* installing *source* packagemultgam...
** using staged installation
** libs
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:383:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument__m128 {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument__m128i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument__m128d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argumentEigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> { typedef float  type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; };
                                           ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argumentEigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; };
                                           ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argumentEigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4i> { typedef int    type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; };
                                           ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:687:35: warning: ignoring attributes on template argumentEigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet4f>
                                   ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:697:35: warning: ignoring attributes on template argumentEigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet4i>
                                   ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:707:35: warning: ignoring attributes on template argumentEigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet2d>
                                   ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argumentEigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argumentEigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argumentEigen::internal::Packet4i {aka __vector(2) long long int}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4i,4>& kernel) {
                                  ^
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:374:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argumentEigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macroEIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argumentEigen::internal::Packet4f {aka __vector(4) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macroEIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argumentEigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macroEIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argumentEigen::internal::Packet2d {aka __vector(2) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macroEIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:386:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:35:39: warning: ignoring attributes on template argument__m256 {aka __vector(8) float}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m256>  { enum { value = true }; };
                                       ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:36:40: warning: ignoring attributes on template argument__m256i {aka __vector(4) long long int}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m256i> { enum { value = true }; };
                                        ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:37:40: warning: ignoring attributes on template argument__m256d {aka __vector(4) double}’ [-Wignored-attributes]
 template<> struct is_arithmetic<__m256d> { enum { value = true }; };
                                        ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:116:43: warning: ignoring attributes on template argumentEigen::internal::Packet8f {aka __vector(8) float}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet8f> { typedef float  type; typedef Packet4f half; enum {size=8, alignment=Aligned32}; };
                                           ^
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:386:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:117:43: warning: ignoring attributes on template argumentEigen::internal::Packet4d {aka __vector(4) double}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4d> { typedef double type; typedef Packet2d half; enum {size=4, alignment=Aligned32}; };
                                           ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:118:43: warning: ignoring attributes on template argumentEigen::internal::Packet8i {aka __vector(4) long long int}’ [-Wignored-attributes]
 template<> struct unpacket_traits<Packet8i> { typedef int    type; typedef Packet4i half; enum {size=8, alignment=Aligned32}; };
                                           ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:455:35: warning: ignoring attributes on template argumentEigen::internal::Packet8f {aka __vector(8) float}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet8f>
                                   ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:515:35: warning: ignoring attributes on template argumentEigen::internal::Packet4d {aka __vector(4) double}’ [-Wignored-attributes]
 struct palign_impl<Offset,Packet4d>
                                   ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:542:34: warning: ignoring attributes on template argumentEigen::internal::Packet8f {aka __vector(8) float}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet8f,8>& kernel) {
                                  ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:570:34: warning: ignoring attributes on template argumentEigen::internal::Packet8f {aka __vector(8) float}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet8f,4>& kernel) {
                                  ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/PacketMath.h:588:34: warning: ignoring attributes on template argumentEigen::internal::Packet4d {aka __vector(4) double}’ [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4d,4>& kernel) {
                                  ^
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:388:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h: In static member functionstatic void Eigen::internal::palign_impl<Offset, Eigen::internal::Packet4cf>::run(Eigen::internal::Packet4cf&, const Eigen::internal::Packet4cf&)’:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h:170:34: warning: ignoring attributes on template argumentEigen::internal::Packet8f {aka __vector(8) float}’ [-Wignored-attributes]
     palign_impl<Offset*2,Packet8f>::run(first.v, second.v);
                                  ^
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:374:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h: At global scope:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argumentEigen::internal::Packet8f {aka __vector(8) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h:207:1: note: in expansion of macroEIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet4cf,Packet8f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argumentEigen::internal::Packet8f {aka __vector(8) float}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h:207:1: note: in expansion of macroEIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet4cf,Packet8f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:388:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h: In static member functionstatic void Eigen::internal::palign_impl<Offset, Eigen::internal::Packet2cd>::run(Eigen::internal::Packet2cd&, const Eigen::internal::Packet2cd&)’:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h:350:34: warning: ignoring attributes on template argumentEigen::internal::Packet4d {aka __vector(4) double}’ [-Wignored-attributes]
     palign_impl<Offset*2,Packet4d>::run(first.v, second.v);
                                  ^
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:374:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h: At global scope:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argumentEigen::internal::Packet4d {aka __vector(4) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_REAL, PACKET_CPLX, false,false> {                                          \
                                                                      ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h:387:1: note: in expansion of macroEIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cd,Packet4d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argumentEigen::internal::Packet4d {aka __vector(4) double}’ [-Wignored-attributes]
   template<> struct conj_helper<PACKET_CPLX, PACKET_REAL, false,false> {                                          \
                                                                      ^
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/arch/AVX/Complex.h:387:1: note: in expansion of macroEIGEN_MAKE_CONJ_HELPER_CPLX_REAL’
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cd,Packet4d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/SparseCore:37:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Sparse:26,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:31,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation ofclass Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7:   required fromclass Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7:   required fromclass Eigen::SparseMatrix<double, 0, int>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25:   required from here
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argumentEigen::internal::packet_traits<double>::type {aka __vector(4) double}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:367:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation ofstruct Eigen::internal::find_best_packet<int, -1>:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57:   required fromstruct Eigen::internal::traits<Eigen::Matrix<int, -1, 1> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required fromclass Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required fromclass Eigen::Matrix<int, -1, 1>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argumentEigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argumentEigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argumentEigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argumentEigen::internal::unpacket_traits<__vector(2) long long int>::half {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argumentEigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Core:434:0,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/Dense:1,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigenForward.h:30,
                 from /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/RcppEigen.h:25,
                 from RcppExports.cpp:4:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation ofclass Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 0>:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required fromclass Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 1>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required fromclass Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, 1>, 3>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required fromclass Eigen::DenseBase<Eigen::Matrix<int, -1, 1> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required fromclass Eigen::MatrixBase<Eigen::Matrix<int, -1, 1> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required fromclass Eigen::PlainObjectBase<Eigen::Matrix<int, -1, 1> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required fromclass Eigen::Matrix<int, -1, 1>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29:   required from here
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argumentEigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation ofclass Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 0>:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required fromclass Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 1>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required fromclass Eigen::DenseCoeffsBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> >, 3>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required fromclass Eigen::DenseBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required fromclass Eigen::MatrixBase<Eigen::Transpose<Eigen::Matrix<int, -1, 1> > >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37:   required fromclass Eigen::TransposeImpl<Eigen::Matrix<int, -1, 1>, Eigen::Dense>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37:   required fromclass Eigen::Transpose<Eigen::Matrix<int, -1, 1> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72:   required from here
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argumentEigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation ofclass Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 0>:
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7:   required fromclass Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 1>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7:   required fromclass Eigen::DenseCoeffsBase<Eigen::Matrix<int, -1, -1>, 3>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34:   required fromclass Eigen::DenseBase<Eigen::Matrix<int, -1, -1> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34:   required fromclass Eigen::MatrixBase<Eigen::Matrix<int, -1, -1> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7:   required fromclass Eigen::PlainObjectBase<Eigen::Matrix<int, -1, -1> >/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7:   required fromclass Eigen::Matrix<int, -1, -1>/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36:   required from here
/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argumentEigen::internal::packet_traits<int>::type {aka __vector(2) long long int}’ [-Wignored-attributes]
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o multgam.so Family.o FamilyAngLogit.o FamilyGev.o MLOptim.o PenOptim.o RcppExports.o commonDefs.o commonFunctions.o commonVarFamily.o mtgamcpp.o smoothOptim.o -llapack -lblas -lgfortran -lm -lquadmath -fopenmp -L/usr/lib/R/lib -lR
installing to /home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-multgam/00new/multgam/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
Warning: /home/lmmista-wap218/rpkgs/multgam/man/multgam-package.Rd:26: All text must be in a section
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location

 *** caught illegal operation ***
address 0x7f5d1fb364ac, cause 'illegal operand'

Traceback:
 1: dyn.load(file, DLLpath = DLLpath, ...)
 2: library.dynam(lib, package, package.lib)
 3: loadNamespace(package, lib.loc)
 4: doTryCatch(return(expr), name, parentenv, handler)
 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
 6: tryCatchList(expr, classes, parentenv, handlers)
 7: tryCatch({    attr(package, "LibPath") <- which.lib.loc    ns <- loadNamespace(package, lib.loc)    env <- attachNamespace(ns, pos = pos, deps, exclude, include.only)}, error = function(e) {    P <- if (!is.null(cc <- conditionCall(e)))         paste(" in", deparse(cc)[1L])    else ""    msg <- gettextf("package or namespace load failed for %s%s:\n %s",         sQuote(package), P, conditionMessage(e))    if (logical.return)         message(paste("Error:", msg), domain = NA)    else stop(msg, call. = FALSE, domain = NA)})
 8: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE)
 9: withCallingHandlers(expr, packageStartupMessage = function(c) invokeRestart("muffleMessage"))
10: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,     character.only = TRUE, logical.return = TRUE))
11: doTryCatch(return(expr), name, parentenv, handler)
12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
13: tryCatchList(expr, classes, parentenv, handlers)
14: tryCatch(expr, error = function(e) {    call <- conditionCall(e)    if (!is.null(call)) {        if (identical(call[[1L]], quote(doTryCatch)))             call <- sys.call(-4L)        dcall <- deparse(call)[1L]        prefix <- paste("Error in", dcall, ": ")        LONG <- 75L        sm <- strsplit(conditionMessage(e), "\n")[[1L]]        w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")        if (is.na(w))             w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L],                 type = "b")        if (w > LONG)             prefix <- paste0(prefix, "\n  ")    }    else prefix <- "Error : "    msg <- paste0(prefix, conditionMessage(e), "\n")    .Internal(seterrmessage(msg[1L]))    if (!silent && isTRUE(getOption("show.error.messages"))) {        cat(msg, file = outFile)        .Internal(printDeferredWarnings())    }    invisible(structure(msg, class = "try-error", condition = e))})
15: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,     character.only = TRUE, logical.return = TRUE)))
16: tools:::.test_load_package("multgam", "/home/lmmista-wap218/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-multgam/00new")
An irrecoverable exception occurred. R is aborting now ...
Illegal instruction (core dumped)
ERROR: loading failed
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