From 03219c01790c80d7cc035bdc962757618925080e Mon Sep 17 00:00:00 2001 From: riasc Date: Tue, 27 Feb 2024 14:39:54 -0600 Subject: [PATCH] added reference sets for hla alleles (to compare against) --- workflow/scripts/genotyping/mhc-II_refset.txt | 660 ++++ workflow/scripts/genotyping/mhc-I_refset.txt | 2930 +++++++++++++++++ 2 files changed, 3590 insertions(+) create mode 100644 workflow/scripts/genotyping/mhc-II_refset.txt create mode 100644 workflow/scripts/genotyping/mhc-I_refset.txt diff --git a/workflow/scripts/genotyping/mhc-II_refset.txt b/workflow/scripts/genotyping/mhc-II_refset.txt new file mode 100644 index 0000000..c042201 --- /dev/null +++ b/workflow/scripts/genotyping/mhc-II_refset.txt @@ -0,0 +1,660 @@ +HLA-DRB1*01:01 +HLA-DRB1*01:02 +HLA-DRB1*01:03 +HLA-DRB1*01:04 +HLA-DRB1*01:05 +HLA-DRB1*01:06 +HLA-DRB1*01:07 +HLA-DRB1*01:08 +HLA-DRB1*01:09 +HLA-DRB1*01:10 +HLA-DRB1*01:11 +HLA-DRB1*01:12 +HLA-DRB1*01:13 +HLA-DRB1*01:14 +HLA-DRB1*01:15 +HLA-DRB1*01:16 +HLA-DRB1*01:17 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