diff --git a/workflow/rules/hlatyping.smk b/workflow/rules/hlatyping.smk index 1995207..96b550a 100644 --- a/workflow/rules/hlatyping.smk +++ b/workflow/rules/hlatyping.smk @@ -429,7 +429,7 @@ rule hlatyping_mhcII: threads: config['threads'] shell: """ - hlahd.sh \ + {config["hlatyping"]["hlahd_path"]}/hlahd.sh \ -t {threads} \ -m 100 \ -c 0.95 \