prevent constant redownload of refgenome when starting multiple workf…

…lows
ylab-hi · Jan 15, 2024 · 559554e · 559554e
1 parent fa550be
commit 559554e
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/workflow/rules/ref.smk b/workflow/rules/ref.smk
@@ -36,10 +36,12 @@ rule mod_genome:
   shell:
     """
       python3 workflow/scripts/modify_ensembl_header.py {input.genome} {output.genome} {input.annotation} {output.annotation}
-      rm resources/refs/genome_tmp.fasta
-      rm resources/refs/genome_tmp.gtf
     """
 
+# this forces to redownload the reference on each execution
+##      rm resources/refs/genome_tmp.fasta
+#      rm resources/refs/genome_tmp.gtf
+
 rule genome_index: 
   input:
     "resources/refs/genome.fasta"