From 97eaae27c5afcc7fca805802e45ecaa14f38fbc2 Mon Sep 17 00:00:00 2001
From: riasc <richard.schaefer@zoho.com>
Date: Wed, 19 Jun 2024 15:01:39 -0500
Subject: [PATCH] Fixed missing input in get_reads_hlatyping_PE rule (tmp
 folder) that caused error when using paired-end reads

---
 workflow/rules/hlatyping.smk | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/workflow/rules/hlatyping.smk b/workflow/rules/hlatyping.smk
index dab7b9d..1b123f5 100644
--- a/workflow/rules/hlatyping.smk
+++ b/workflow/rules/hlatyping.smk
@@ -56,7 +56,8 @@ rule get_reads_hlatyping_SE:
 
 rule get_reads_hlatyping_PE:
   input:
-    unpack(get_input_hlatyping_PE)
+    unpack(get_input_hlatyping_PE),
+    tmp="tmp/"
   output:
     fwd="results/{sample}/hla/reads/{group}_{nartype}_PE_R1.fq",
     rev="results/{sample}/hla/reads/{group}_{nartype}_PE_R2.fq"