From cfab5741db20b5d8f15d55d5104e8b9c742e3413 Mon Sep 17 00:00:00 2001 From: riasc Date: Fri, 8 Mar 2024 23:57:56 -0600 Subject: [PATCH] changes in versioning --- workflow/envs/samtools.yml | 2 +- workflow/envs/spladder.yml | 2 +- workflow/envs/transindel.yml | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/workflow/envs/samtools.yml b/workflow/envs/samtools.yml index 487b6c5..556860b 100644 --- a/workflow/envs/samtools.yml +++ b/workflow/envs/samtools.yml @@ -1,6 +1,6 @@ channels: - bioconda dependencies: - - samtools=8.6.13 + - samtools=1.9 - bcftools=1.9 diff --git a/workflow/envs/spladder.yml b/workflow/envs/spladder.yml index f7bd511..5059043 100644 --- a/workflow/envs/spladder.yml +++ b/workflow/envs/spladder.yml @@ -3,7 +3,7 @@ channels: - bioconda dependencies: - python=3.6 - - pysam=3.6.13 + - pysam=0.17.0 - pip=21.2.2 - pip: - spladder==3.0.4 diff --git a/workflow/envs/transindel.yml b/workflow/envs/transindel.yml index ac1cd48..e7b22ac 100644 --- a/workflow/envs/transindel.yml +++ b/workflow/envs/transindel.yml @@ -6,7 +6,7 @@ channels: dependencies: - samtools=1.9 - pysam=0.15.3 - - htseq=1.9 + - htseq=2.0.3 - pyfaidx=0.7.0 - pip=24.0 - pip: