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Brain Tumor segmentation (delineation) of Gliomas using Transformers

Description

We delineate the borders of the brain tumors gliomas using different Transformer-based Deep Learning Models.

How to run

First, install dependencies

# clone project   
git clone https://github.com/ynes99/BraTS_Segmentation

# install project   
cd BraTS_Segmentation
pip install -e .   
pip install -r requirements.txt

Next, The Jupiter Notebook dataset exploration helps us explore the dataset used in this project which is the BRATS dataset.
In The Notebook Segment_Anything_Model we have the necessary preprocessing for the data to be inputted directly into the model.

• SAM
• Trans-U-Net (Progress)
• Swin-U-Net

Presentation of last studies internship

This is the written report for this internship : Presentation end of studies internship.pdf.

demo.mp4

Citation

@misc{Ines,
  title={Delineation of Brain Tumors for CAD},
  author={Ines Bouhelal},
  year={2023}
}