Skip to content

Releases: yollct/spycone

v0.2.1

29 Jun 20:01
Compare
Choose a tag to compare

documentation update
biopython version 1.8.0
sklearn version 1.2.2

v0.2.0 - DOMINO bug

20 Sep 13:50
Compare
Choose a tag to compare
  • fix DOMINO bug: remove global variable G_modularity and pass directly as arg.
  • added pydot as dependencies

v0.1.8

04 May 14:32
Compare
Choose a tag to compare

Fix visualize clusters
Fix DOMINO
remove keytype parameters in dataset

v0.1.5

15 Mar 14:28
Compare
Choose a tag to compare
  • Fix bugs in GO terms, domino
  • Visualize modules with pydot. Saving image as svg.

Fix clusters visualization

11 Jan 15:26
Compare
Choose a tag to compare

Return plotly when clusters are specified, else return seaborn figure.

v0.1.3

22 Dec 13:57
Compare
Choose a tag to compare
  • fix bug in detect_isoform_switch (avoid all zeros in mannwhitney u test, adapt for 2 replicates)
  • gsea_plot fixed

v0.1.2

01 Nov 16:35
Compare
Choose a tag to compare

Fix array bug in preprocess

v0.1.1

25 Oct 08:47
Compare
Choose a tag to compare

Reviewed version.

v0.0.8

26 Apr 13:23
Compare
Choose a tag to compare

fix import community

v0.0.3

19 Apr 11:12
Compare
Choose a tag to compare

Fixed bugs in isoform switch detection.
Set default biological network: biogrid human weighted with DDI