example_config.json

{
    "data": [
        {
            "name": "My 1st sample",
            "file": "path/to/seurat/data.rds",
            "cluster": "res.1",
            "embedding": "umap",
            "diff_ex_cluster": "res.1", 
	        "diff_ex_file": "path/to/differential_expression/markers.csv"
        },
        {
            "name": "My 2nd sample",
            "file": "path/to/seurat/data2.rds",
            "cluster": "res.1_rename1",
            "embedding": "tsne",
            "diff_ex_cluster": "res.1", 
            "diff_ex_file": "path/to/differential_expression/markers.csv",

            "---The Options Below Are Optional---": "",

            "cluster_name_mapping": {
                "C1": "Neurons",
                "C2": "Astrocytes",
                "C3": "Neural Progenitors"
            },
            "pt_size": 2,
            "font_scale": 0.75,
            "label_coordinates": [
                {"cluster": "C1", "x": 0.1, "y": 1.1},
                {"cluster": "C2", "x": 0.5, "y": 1.5},
                {"cluster": "C3", "x": 0.8, "y": 1.8}
            ]
        }
    ],
    "config": {
        "ui_title": "Single Cell Browser",
        "title_link_text": "Optional subtitle (e.g. your lab)",
        "title_link_url": "http://optional-link-to-your-lab.com"
    }

}