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Alex Kanitz edited this page Jun 5, 2020 · 8 revisions

Functionalities to implement

Infer organism from which samples were derived
Infer read layout: single vs paired
Infer read layout: stranded/unstranded
Infer read layout: sense/antisense for each mate
Infer sequences of any adapters present in reads

Stretch goals

Infer type of captured molecule (RNA, DNA)
Infer method type (RNA-Seq vs CLIP vs A-Seq etc.)