diff --git a/CHANGELOG.md b/CHANGELOG.md index 2fa972d..9f6e766 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,7 +5,18 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html). ## [Unreleased] -[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.6.2...master +[Unreleased]: https://git.embl.de/grp-zeller/GECCO/compare/v0.6.3...master + +## [v0.6.3] - 2021-05-10 +[v0.6.3]: https://git.embl.de/grp-zeller/GECCO/compare/v0.6.2...v0.6.3 +### Fixed +- HMMER annotation not properly handling inputs with multiple contigs. +- Some progress bar totals displaying as floats in the CLI. +### Changed +- `PyHMMER` now sets the `Z` and `domZ` values from the number of proteins given to the search pipeline. +- `gecco.cli` delegates imports to make CLI more responsive. +- `pkg_resources` has been replaced with `importlib.resources` and `importlib.metadata` where applicable. +- `multiprocessing.cpu_count` has been replaced with `os.cpu_count` where applicable. ## [v0.6.2] - 2021-05-04 [v0.6.2]: https://git.embl.de/grp-zeller/GECCO/compare/v0.6.1...v0.6.2 diff --git a/gecco/__init__.py b/gecco/__init__.py index 37a2fa0..fa2ab86 100644 --- a/gecco/__init__.py +++ b/gecco/__init__.py @@ -1,6 +1,13 @@ """Biosynthetic Gene Cluster prediction with Conditional Random Fields. + +See Also: + *Accurate de novo identification of biosynthetic gene clusters with GECCO* + Laura M. Carroll, Martin Larralde, Jonas Simon Fleck, Ruby Ponnudurai, + Alessio Milanese, Elisa Cappio, Georg Zeller. bioRxiv 2021.05.03.442509 + `doi:10.1101/2021.05.03.442509 `_ + """ __author__ = "Martin Larralde" __license__ = "GPLv3" -__version__ = "0.6.2" +__version__ = "0.6.3"