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Release v0.9.7
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althonos committed May 26, 2023
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24 changes: 23 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -5,7 +5,29 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).

## [Unreleased]
[Unreleased]: https://github.com/zellerlab/GECCO/compare/v0.9.6...master
[Unreleased]: https://github.com/zellerlab/GECCO/compare/v0.9.7...master


## [v0.9.7] - 2023-05-26
[v0.9.7]: https://github.com/zellerlab/GECCO/compare/v0.9.6...v0.9.7

### Added
- Command line option to annotate proteins using bitscore cutoffs from HMMs.
- Command line option to disentangle overlapping domains after HMM annotation.

### Changed
- Bump `pyhmmer` dependency to `v0.8.0`.
- Bump `pyrodigal` dependency to `v2.1.0`.
- Rewrite `gecco.model` to use `polars` for managing tabular data.
- Replace `pandas` dependencies with `polars`
- Update `gecco run` to skip type classification for tasks without an assigned cluster type.

### Fixed
- `Cluster.to_seq_record` crashing when called on a cluster with `types` attribute unset.
- Progress bar resetting when performing domain annotation with multiple HMMs.

### Removed
- Support for Python 3.7.


## [v0.9.6] - 2023-01-11
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2 changes: 1 addition & 1 deletion gecco/__init__.py
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__author__ = "Martin Larralde"
__license__ = "GPLv3"
__version__ = "0.9.6"
__version__ = "0.9.7"

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