Important update, please run setup_conda_env.bat to reinstall the environment.
Major updates
Dependency
- Python 3.8+ will be used for this and later version of ACT to accommodate the required packages.
- pyqtgraph is no longer included locally.
- Several packages had been upgraded or downgraded to avoid dependency clash.
Algorithm
- Skan package will be used as the primary length calculation package for clusters detected from super-resolution images. Both main branch length and total branch lenght will be reported. However, measuring length of the skelentonized cluster is not ideal for dot-like/round particles, it would be more accurate to use the major axis length in this case.
Fixed bugs and improvements
Diffraction limited image analysis
- Fixed error raised when loading result of a previous analysis.
Super resolution image analysis
- Removed redundant lines in cluster analysis. Fixed error when only 1 cluster present.
- Fixed image not closed after SR drift correction.
- Provided alternative method to check SR image frames
Liposome Assay analysis
- Fixed error caused by dependency updates.
- Included progress bar in prompt for samples.
- Changed result folder naming.
Miscellaneous
- Setup batch now will remove the existed ACT_python3 environment before build.
- Fixed UI connections.
- Muted FutureWarning from pandas.
- Updated simulation codes.