"SyntaxError: invalid syntax" while running "sparse extract"

[housw]

Hi Zhemin,

I installed SPARSE in a docker image (Ubuntu 16.04 ) with Python 2.7:

pip install setuptools && \
    pip install wheel && \
    pip install  meta-sparse

It works for the other subcommands except extract, here is the error:

sparse extract --workspace sparse_workspace --ref_id 337
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/dist-packages/SPARSE/SPARSE.py", line 133, in SPARSE
    exec '_{0}(sys.argv[2:])'.format(sys.argv[1])
  File "<string>", line 1, in <module>
  File "/usr/local/lib/python2.7/dist-packages/SPARSE/SPARSE.py", line 92, in _extract
    from modules.C2_get_specific_reads import get_SSR
  File "/usr/local/lib/python2.7/dist-packages/SPARSE/modules/C2_get_specific_reads.py", line 22
    r = sum([ float(p.split(':')[1]) for p in part[4: ])
                                                       ^
SyntaxError: invalid syntax

Hope it helps.

Thanks,
Shengwei