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HLA typing for SNP2HLA output #20

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xiw588 opened this issue Feb 25, 2023 · 1 comment

xiw588 commented Feb 25, 2023

Hi, I wonder if I could feed the bed, bim and fam files output from SNP2HLA into HIBAG to get the HLA class I and II typing.

Thank you in advance!

Owner

zhengxwen commented Feb 25, 2023

Not sure what the output of SNP2HLA is.
You can use the raw SNP genotypes as the input of HIBAG.

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